2DLL,2IRF,2O6G,2O61


Conserved Protein Domain Family
IRF

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pfam00605: IRF (this model, PSSM-Id:395482 is obsolete and has been replaced by 459863)
Interferon regulatory factor transcription factor
This family of transcription factors are important in the regulation of interferons in response to infection by virus and in the regulation of interferon-inducible genes. Three of the five conserved tryptophan residues bind to DNA.
Statistics
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PSSM-Id: 395482
Aligned: 85 rows
Threshold Bit Score: 106.47
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DLL_A          8 KLRQWLIDQIDSGKY-PGLVWEN-EEKSIFRIPWKHAGKQDYNrEEDAALFKAWALFKGKFREGiDKP--DPPT---WKT 80 
ESO11581        2 KMRHWLLQQVESGRY-PGLRWLD-DEMKILKIPWKHGSNSAWA-TSDGQLFYNWLAYTGKL------StcKSKTfrrFKA 72  Helobdella rob...
XP_002610326   14 RMRPWLEQQLDREEY-HGFCWLD-KKERKFKVPWIHASSQHFNhMKHSAVFKAWAVHTGKYFHSfLYQ--SCRT---WKA 86  Florida lancelet
XP_002107832    5 vMTDWLKEILEENAV-EGIHYVN-GSKDTFAIKWVHASNKSYDpDCHGAIFKRWMKKSRKL----DKYksNYSM---WKT 75  Trichoplax adh...
XP_009020091    9 RLRDWLIQQANKNE---GASYYDdRDRNLIKIPWVHGSKKHWDsNVHCRIFKLWAEYSGRFiviiiinkkDPKI---WKS 82  Helobdella rob...
Q4H3B1         28 QFKPWLIEQISSGNY-PGLEWIDsEQQRVFKLPWTKKNYPGW--EDHHKIFKAWAEHRSFI-RNqKPPtqHVSL---MKS 100 vase tunicate
NP_001071953   26 RFTTWLVQQISSGNY-LGLEWVEgSNKRIFKIPWTKQNFPNW--AEHHKIFEDWALLRGRWNTVtGQPnqSFSQ---MKS 99  vase tunicate
14_pfamImport   1 PLRVWLLKRLNQAKYpDVVYWTD-KERGVFRILWTKKGNPNW--KQHFQIFEDWAKHRDNFRPDsPI---NYDQ---LKS 71 
XP_009857957   12 TLRNWLFNRLNEETYgDALKWDG-NNKGVFHILWTKKGDPNW--ENHFQIFVGWAKHKDRFDCNsPI---NYDK---LKS 82  vase tunicate
NP_001122338   10 PLRHWLVKKIEESAF-DGLEWVN-REEKTFKIPWTQKKYPNW--EKHCEIFKAWAKHRGSTNLGdPF---DFKK---LKG 79  vase tunicate
2DLL_A         81 RLRCALNKSNDFEELV-ERSQLdIS-DPYKVYRIV 113
ESO11581       73 NFRCALKSLKDVVEVK-ERSKKsGK-DACKVFMFL 105 Helobdella robusta
XP_002610326   87 NFRCALNSLPDVVELRgENCKAkGE-AAYKVYRIV 120 Florida lancelet
XP_002107832   76 NFRCAINSLPDVMCLSaTDSQFaDD-DKYKGYKIF 109 Trichoplax adhaerens
XP_009020091   83 NFRCALNSLSDVKEVK-ELSRIqNGvEGYKVYKII 116 Helobdella robusta
Q4H3B1        101 NFRTILRKCRDLEEQTnLHQLGlQT-GNYKVYKVL 134 vase tunicate
NP_001071953  100 NFRTILRKCDYIKELHqSHQLGlQV-GNYKVYKLL 133 vase tunicate
14_pfamImport  72 NFRNLIKKSSDFEELE--TVNNqQT-GNCKVFRVR 103
XP_009857957   83 NFRNLIKKTTDFEEIE--NVRNqQT-GNRKVYRFR 114 vase tunicate
NP_001122338   80 NFRCALNKSDDFEEIKeRNVSDqQT-GNYKIYRLL 113 vase tunicate
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