1XJT,4ZPU,2LZM,2ANV


Conserved Protein Domain Family
lyz_endolysin_autolysin

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cd00737: lyz_endolysin_autolysin 
Click on image for an interactive view with Cn3D
endolysin and autolysin
The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
Statistics
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PSSM-Id: 381599
Aligned: 248 rows
Threshold Bit Score: 86.8034
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
catalytic
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: catalytic residues [active site], 3 residue positions
Conserved feature residue pattern:E [DC] TClick to see conserved feature residue pattern help
Evidence:
  • Comment:in some cases, cysteine substitutes for the canonical aspartic acid residue found in related T4 lysozyme like proteins

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #        #          #                                                   
1XJT_A        34 GLELIGNAEGCrrdPYXCPa-----gVWTDGIGNTHgv------------tpGVRKTDqQIAADWEKNILIAERCINQhf 96  Enterobacteria ...
WP_026887570 136 GVNFIADYEDFyaePYRVLds----qNQTIGYGHVIisg-----------ehFESITNvQAKALLKKDLQSFVDIVNTi- 199 Clostridium bei...
WP_017352463 139 GINFIADYEKFyetAYGGLdy----qNETIGYGHVIksy-----------enFTTLTEkEAKALLKKDLESFVYLVNDmv 203 Clostridium bot...
ACD51130     112 CINFIKSWEGFfakPYYDMv-----gVLTLGYGMTGdei-----------kgLSSITEsKASDMLKDLINNKYAQIIKks 175 Clostridium bot...
ENZ01699     215 LLQFTKSWEGFsatPYQDAg-----gNWTIGYGICTynq-----------rpDYTMTEaEASQQLENTLNDLASQLYEvv 278 Clostridium col...
CDM70335     271 LVEFVKAYEGFsstPYYDSa-----gVKTIGYGSTSgwi-----------inKSSVTKaEATQALMEDINVRAKTINKdl 334 Clostridium sp....
WP_015613748 325 IIYFIKECEGFapsLYHDEv-----gVLTGGYGMTGael----------nglPSSISEtTATQLLTTNVNNNYYTQVLni 389 Clostridium pas...
WP_022747079 117 GADFIGSWEGFwskADYDPcypgvekYITIGYGTTMearpdv-----ftdgiNTKCTIeQAREWLEEEAQSCAKTIKSdl 191 Clostridium sac...
ADL41706     111 LFEFVKSYEGYssiAYRDKd-----gVWTIGIGHVLrdkelgeyvdlktnkpKKAITEeKAYEFFKNDIKGATDAINKfm 185 Caldicellulosir...
WP_022746414 113 GAEFVSSWEGFs-sTWEDVgd----gYWTIGIGTATsgtlgk----qlyasgITSCTKeQAYKWLEQECSSCYEAIKGkl 183 Clostridium sac...
Feature 1                                                                                        
1XJT_A        97 ----rgKDXPDNAFSAXTSAAFNXGcnslrtyyskargxrveTSIHKWAQKGEWvnx----cnHLPDFVNsngvpLRGLK 168 Enterobacteria ...
WP_026887570 200 -----tLNLTQCQFDAIISFAYNCGisa-----------lknSTLLKDIKANASiek---ireDFLMWCNcngkrELGLY 260 Clostridium bei...
WP_017352463 204 ----qgLSINQHQFDSLISFSYNCGana-----------lktSTLLKDIRNGAEldt---iksDFCMWCIcngekSLGLW 265 Clostridium bot...
ACD51130     176 ld-dknISLKQNEFDALVSFAYNCGtag-----------llgSTLYKNIVSGIRdknt--iisNFQAWSNgggkrIEGLY 241 Clostridium bot...
ENZ01699     279 ----geYDLNQSEFDSLVDFSYNLGlea-----------lrsSTLLRNINACKNnst---lmeDFRMWSYcdgrpLDGLL 340 Clostridium col...
CDM70335     335 k--sknVSLAQKEFDSLCSFAYNLGlsal----------ldtSNLYKKVCNGVRget---lrsEFQKWRYaggkeLQGLL 399 Clostridium sp....
WP_015613748 390 ihargvANPTQREVDAFTSFAYNEGvqa-----------fsqSTLLKLYASGSRgad---iqtQFNQWIYagntvLPGLV 455 Clostridium pas...
WP_022747079 192 d--irgVSLSQNELDALISFAYNCGaga-----------llgSTLYRNICDNIKdgdt--itsNFQAWSKangatVQGLY 256 Clostridium sac...
ADL41706     186 e--nnkIQLSQNQFDALVSFTFNVGsawtnn-----emsktrDDIIKVVKNGIDtklerelrdDFLSWSKakgqvLEGLQ 258 Caldicellulosir...
WP_022746414 184 d--annITLAQNQIDALISMAYNIGacg-----------lvdSTLFKNILNGVTdeat--irsNFEAWDKcngvvWDGLK 248 Clostridium sac...
Feature 1                   
1XJT_A       169 IRREKERQLCL 179 Enterobacteria phage P1
WP_026887570 261 RRRYDEFEMYK 271 Clostridium beijerinckii
WP_017352463 266 RRRIDEFDIFA 276 Clostridium botulinum
ACD51130     242 RRRMKEAAMFL 252 Clostridium botulinum E3 str. Alaska E43
ENZ01699     341 RRRTAEAQMWL 351 Clostridium colicanis 209318
CDM70335     400 NRRNEECDMFI 410 Clostridium sp. M2/40
WP_015613748 456 TRRNYEWGIFS 466 Clostridium pasteurianum
WP_022747079 257 KRRTSEAVLFL 267 Clostridium saccharobutylicum
ADL41706     259 RRRYDEWKMFV 269 Caldicellulosiruptor obsidiansis OB47
WP_022746414 249 KRRDSEADLYL 259 Clostridium saccharobutylicum

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