Conserved Protein Domain Family
YmaE-like_MBL-fold

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cd07727: YmaE-like_MBL-fold 
uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain
Includes the uncharacterized Bacillus subtilis YmaE and Nostoc all1228 proteins.Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.
Statistics
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PSSM-Id: 293813
Aligned: 38 rows
Threshold Bit Score: 201.27
Created: 9-Jun-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                   # # ##            
O31787     62 HLYSIKTEpefAIGQTAHLIQHk----gFNVLWDCMTYLDQKTIDQin---elGGIQAIALSHPHYYSTQVEWAEa-FQA 133 Bacillus subtilis ...
CBJ28893   67 GVFHLGFHgesSFGCSPWLVQRp----eGNMMMDSPRFHPGLAKELda----kGGVSLMVLSHIDDVGDHQRWKErfPNM 138 Ectocarpus silicul...
CDF38654  132 DVFYNGFAspdTFGGASWLVIQrgd-dpCVIMFDCPRFFKPLSKAIkkmaeplGGIRYLVLSHQDDVAGHAKWASe-LGA 209 carragheen
CAN90971  156 DVWALGHPareNAGATAYFIERp----gGGVLVDLPSPTEAVFRFLee----rGGVRWIFLTHRDHTAHHAEFAArfPGC 227 Sorangium cellulos...
EWM24596  146 AVYLLGHYspkNAGATCYLIVRpn---gGNVLVDCPVPNASLVERIke----lGGAKYLVFTHKDHTAFTKEWKMafPAI 218 Nannochloropsis ga...
CEM19038  147 YEFYCLGAvthTLGTESYLIVReg---rGNVMVEPASHTKQVVDFVmq----rGGVKYLVLTHRDHTKGHSFWRMq-TGC 218 Vitrella brassicaf...
EKU21733  122 NVYVGGPPskkLFGGASYLIVGqgnkrgRNILVDTPDPEEALVDRVra----lGGLDYIIFTHIDHVSLHRAWKEafPNV 197 Nannochloropsis ga...
ETP69376   62 GLFSVKTKpefAIGQSAYIVQEs----gFHLLWDCLTYFDANSIEAik---kmGGIDAIALSHPHYYASQVEWADa-LDA 133 Planomicrobium gla...
AHA29903   60 GVYAIQTTpafGIGQTAYLVKGk----sFNLLWDCITYLDSTTKEQld---elGGIQAIALSHPHYYATQVEWAEt-FDV 131 Exiguobacterium sp...
EED05850   18 CLWGIETVpefAIGQHAKLIRTq----eGNILWDCISYLDDVTVDLir---giGGIRAIAVSHPHFYSSMVEWAEr-FDA 89  Alicyclobacillus a...
Feature 1                                                                   ##                
O31787    134 PIYIHEDDKEWVTrpsnhi-----------hfwsgeTLNMKp-----------GLDLYRLGGHFKGGAVLHWSkgn---- 187 Bacillus subtilis ...
CBJ28893  139 KRVMHKADVQRYGdtrnieiklds-dsadgqigsrdYWQLGd-----------GLRALHTPGHSRGSVTLLYHgnnksah 206 Ectocarpus silicul...
CDF38654  210 ERVIHKRECNERQgttacev---------qledanfPYTLMe-----------GVELIHVPGHTSGSIAMLHRg------ 263 carragheen
CAN90971  228 RRVLAAADVNPRGagrnpatsev----eiqlsdrlePMTLDgspladsdlagaELAVLSQPGHTAGSMCLLYRg------ 297 Sorangium cellulos...
EWM24596  219 QRVLHAGDVVENRkhfffpytgd----veiklaggkAQPLDke---------gDIVLIPIPGHSPGSLAILFQe------ 279 Nannochloropsis ga...
CEM19038  219 KRVLHSDEMCYLSvgpfestygle-hwvrgkgpvssLPDGDp-----------DVKLIHTPGHTKGHLCVLYKd------ 280 Vitrella brassicaf...
EKU21733  198 QRVMHADDFNDDTqdfeiklqggktartadggihdaAPPLVcslp----gwedELELIHGPGHTPGSIYVLYKe------ 267 Nannochloropsis ga...
ETP69376  134 KIYIHEDDRQWVTrpsgrm-----------vfwsgeSLMLHe-----------GLVLHRLGGHFKGGAVLEWQngf---- 187 Planomicrobium gla...
AHA29903  132 PIYIHEDDASFVTrpseri-----------vfwsgeRLELAe-----------DVMLHRVGGHFKGAVICERKda----- 184 Exiguobacterium sp...
EED05850   90 CIYLHVRDKQWVMrpseri-----------vlwdgpKFELGs-----------ELTLFHVGGHFAGSTVLLWKega---- 143 Alicyclobacillus a...
Feature 1                       #                                                 #      
O31787    188 ---------egkGCLLTGDIItvaadrnwvsfm-ysypnliplpasKVEEIAAkvk--plqFNRLYNAFSKVVKE 250 Bacillus subtilis subsp...
CBJ28893  207 paaegggsaqaeGIAFTGDHLalsgrtgaltgf-prygydlamqseSIELLARpd----lkFRWILPGHGRMIRF 276 Ectocarpus siliculosus
CDF38654  264 -----------tQSLFTGDHIfysqredrlcga-ryimhsreelvkSVEKLVNi------pFLHGWPGHGGHFHF 320 carragheen
CAN90971  298 ------------RFLFTGDHLaysrrigqmmafrlqcwndwerqirSVRRLVAlagaghlrFAWLLPGHGEWHRL 360 Sorangium cellulosum So...
EWM24596  280 ------------HYLFTGDSLfysrprghlvssrlhcwssweeqraSLQALDSy------qWAHVLPGHGEPKRF 336 Nannochloropsis gaditana
CEM19038  281 ------------RLLMTGDHLcyshrvkslmciravcwdnwrtqleSVKMLKQf------sFLWVLPSHGQRYKA 337 Vitrella brassicaformis...
EKU21733  268 ------------KFLCTGDSLhysravghlvgfrlqcweswsrqqtSWRRLLRhs----saFSWVLPGHGEPHRF 326 Nannochloropsis gaditan...
ETP69376  188 ---------drkGVLLPGDIVrvmpgrdwasfm-ysypnfiplppdIVERMAKklst-ikfKRVYDAFQRIVPDQ 251 Planomicrobium glaciei ...
AHA29903  185 ----------saGLLLTGDIIrivadrawvsfm-ysypnviplpakTVARMAEtlrp-lqfEKLYDAFHRKIETG 247 Exiguobacterium sp. MH3
EED05850  144 ---------qgrGVLLTGDTLsvsadrrhvsfm-ysfpnriplsatIVESIRSkle--plsFERLYCQRRLKIDP 206 Alicyclobacillus acidoc...

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