Conserved Protein Domain Family
OrfB_Zn_ribbon

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pfam07282: OrfB_Zn_ribbon 
Putative transposase DNA-binding domain
This putative domain is found at the C-terminus of a large number of transposase proteins. This domain contains four conserved cysteines suggestive of a zinc binding domain. Given the need for transposases to bind DNA as well as the large number of DNA-binding zinc fingers we hypothesize this domain is DNA-binding.
Statistics
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PSSM-Id: 284650
Aligned: 54 rows
Threshold Bit Score: 74.5595
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O66931   327 HGKVKEYLEYKAKEYGIEVEYISEAYtSGVDSSVEGAVNKEtyt---peARVKRGLFRTRLLGFLNADVNACRNLLKK 401 Aquifex aeolicus
AAK41099 359 YRKLMESIELKAQEYGMKVFEVVEYN-TSKYCAYHDVEVKR----------NPRGVVNRPLGHKLHSDLNGALNILKK 425
Q9WXQ4   302 FRKLMSQIEYKAQIFGIEVVRISEAH-TSKTCPVCGTQNRP----------SGRNYKCAGCGFEYHRDGVGAINIWKR 368 Thermotoga maritima
Q9X0B6   300 FRKLIEMIRYKAEQFGIEVKLISEAN-TSKTCPVCGAKNKP----------NGRRYHCKTCGFEYHRDGVGAINIWKR 366 Thermotoga maritima
Q8YWC9   289 HGETRAFLTYKSQRLGMKVEIQCERY-SSQVCPSCGQRHKP----------KNRTYKCK-CGFEFHRDGVGCVNIRRK 354 Nostoc sp. PCC 7120
P81315     6 AKKFLGYLKNKCLEFGVKVIEGNPAY-TSIKCPNCGSRLSQlykladerALPSRLMYCFDCGFYADRDTVAVFNLIKR 82  Methanocaldococcus ja...
Q96XT5   297 YRRVQYWIEWQAKKHGLLVVYVNPHY-SSVSCPKCGKKMVE---------VSYRWFKCI-CGYENDRDVIGIMNLNRR 363 Sulfurisphaera tokodaii
Q9HKN3   307 YRLFQMFVEYKSK---NETLYVDPEG-TSSECPVCGGILEH---------PIWKMSKCDNCGATFDRDRLSSLSIAVR 371 Thermoplasma acidophilum
Q58161   192 FSKLQFFIEYKAKWDGLDVEYVNPSR-TSKLCPICGCKLDP---------NGQRLLKCNNCNLVFDRDVVATFNLFKK 259 Methanocaldococcus ja...
Q8U235   288 FRKLQRIIEYKAKLRGIKVIFVNPAY-TSTLCPICGGKLSP---------NGHRVLKCK-CGFEADRDVVGSWNVRLK 354 Pyrococcus furiosus
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