6M9X,4DKM,4DKN


Conserved Protein Domain Family
GFP

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pfam01353: GFP (this model, PSSM-Id:396084 is obsolete and has been replaced by 426217)
Click on image for an interactive view with Cn3D
Green fluorescent protein
Statistics
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PSSM-Id: 396084
Aligned: 12 rows
Threshold Bit Score: 143.419
Created: 22-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6M9X_A         5 KTHELHIFGSFNGVEFDMVGRGIGNPNEGSEELNAKFTKGP-LKFSPYILVPHLXY--YQYLPFPDG-M--SPFQAAMHD 78  Florida lancelet
EEN59117       5 TAHDLHIFGSVNGAEFDLVGGGKGNPNDGTLETSVKSTRGA-LPCSPLLIGPNLGYgfYQYLPFPGG-A--SPFQTAITD 80  Florida lancelet
XP_002603213   8 TNLDLHIYGSINGMEFDMVGGGSGNPKDGSLAVNVKSTKGA-LRVSPLLVGPHLGYghYQYLPFPDG-A--SPFQAAVNN 83  Florida lancelet
EEN59118       5 TAHDCHMFGSINGHEFDLVGGGNGNPNDGTLETKVRSTKGA-LPFSPVILAPNLGYgyHQYLPFPAG-T--SPYQQAITN 80  Florida lancelet
4DKM_D         3 TTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGP-LGFSPYIVVPNIXf--HQYLPFPDG-M--SPFQAAADD 76  Florida lancelet
4DKN_B         9 ATHDIHLHGSINGHEFDMVGGGKGDPNAGSLVTTAKSTKGA-LKFSPYLMIPHLXY--YQYLPYPDG-P--SPFQVSMLE 82  Florida lancelet
ETL77590     102 VPILIELNGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGK-LPVPWPTLVTTLSYgvQCFSRYPDHmKqhDFFKSAMP- 179 Phytophthora pa...
EDO42459       8 MKLHLILEGSVNGHCFEIHGEGEGKAFEGEQWSKFTVKKGGpLPFSFDLIAPCLKYgsKPFVKYPDDmT--DFFKAAVEN 85  starlet sea ane...
EDO41650      64 MKLHFKMEGSVNGHCFEIQGVGEGKAFDGEHWSKLCVVKGKhLPFSFDILMPSMSYgtKQFAKYPAGmT--DFFKAAVEN 141 starlet sea ane...
PFX12807      42 MTMKYKMEGCVNGHPFTIRGNGNGNPYETKQPVT--------LPQNHVVEHRIVRTg----------------------- 90  Stylophora pist...
PFX14646      20 MTMKYKMEGCVNGHPFTITGVGNGNPYD---------------------------------------------------- 47  Stylophora pist...
GAA89768       7 IFDEVKHNTKVIINDIEYQGFGVGKANNGLLTSQLNHD----LNFDPEILAVHLIVgyPSYSEYKEGaT--DLFKPSTLL 80  Aspergillus kaw...
6M9X_A        79 GsGYQVHRTIQYE-DGASVTAHYRYTYEGSHIKGEFQVIGT-----------------------GFPPDGPVMTNKLTAM 134 Florida lancelet
EEN59117      81 G-GYQVHRVFKFE-DGGVLNCNFRYTYEGGKIKGEFQLIGS-----------------------GFPAGGPVMSGGLTTL 135 Florida lancelet
XP_002603213  84 G-GYQMHRSFNFE-DGAVLTATYNYSYSGGKIQGEFHLVGS-----------------------GFPDDSPVMTNALTGL 138 Florida lancelet
EEN59118      81 G-VYQKHRTFKFE-DGGVMTINFRYTYSGNKIKGEFHVVGS-----------------------GFPDDGPVMTNSLQQH 135 Florida lancelet
4DKM_D        77 GsGYVVHRTIQFE-DGASLTGNYRYSYDGGHIKGEFHVVGS-----------------------GFPADGPVMTKSLTAV 132 Florida lancelet
4DKN_B        83 GsGYAVYRVFDFE-DGGKLSTEFKYSYEGSHIKADMKLMGS-----------------------GFPDDGPVMTSQIVDQ 138 Florida lancelet
ETL77590     180 E-GYIQERTIFFEdDGNYKSRAE-VKFEGDTLVNRIELTGT-----------------------DFKEDGNILGN-KMEY 233 Phytophthora pa...
EDO42459      86 G-GLSWERTMSLEqDGGFCSVVNTSKLDKDGLHYHMTFQGI-----------------------NLDPNGPVMKKMTMGW 141 starlet sea ane...
EDO41650     142 G-GLSWERTMTFE-DGGYCTIVNTSELKDGSLHYHTNFHGI-----------------------NLKPDGPVMQKRTMGW 196 starlet sea ane...
PFX12807      91 --------------DGDKVNLVETAEAHVNPL----TKQPV-----------------------TLPPNHVVEHR----- 124 Stylophora pist...
PFX14646      48 --------------------------LEGKCFHHKSMFHGV-----------------------NFPADGPIMKKETTGW 78  Stylophora pist...
GAA89768      81 G-GYKYQRKYRFS-NGATFSSFHNISFDEKK-----GLSGCfttrdfpseafagqtwdvqdlveTFIPSGPGLIKSVMAV 153 Aspergillus kaw...
6M9X_A       135 DWSVTKMLYPNDkTILSTADCSYTTT----AG--KRYQSKMRENNT------FAKPMAADILQK-----QPMFVFRKSEL 197 Florida lancelet
EEN59117     136 DRSVAKLQCSDDcTITGTNNWSFCTT----DG--KRHQADVQTNYI------FAKPLPAGLKEK-----MPIFLGHQIEV 198 Florida lancelet
XP_002603213 139 DRSVSKLMCTSDdKLVESVHWSYRTS----SG--GRYRATVQTNFT------FAKPIAAGLKNN-----MPMFVFRQLEV 201 Florida lancelet
EEN59118     136 DHNVERLMVLGDkTIGSDNMWTFTEK----GGkdKRYKAEVMTNAT------FAQNLQPGLKNV-----MPLFVFRKVDI 200 Florida lancelet
4DKM_D       133 DWSVATMLFPNDtTVVSTIDWTCPTT----SG--KRYHATLRTNYT------FAKPIAATILQK-----QPMFVFRKTEV 195 Florida lancelet
4DKN_B       139 DGCVSKKTYLNNnTIVDSFDWSYNLQ----NG--KRYRARVSSHYI------FDKPFSADLMKK-----QPVFVYRKCHV 201 Florida lancelet
ETL77590     234 NYNAHNVYIMTD-KAKNGIKVNFKIRhnieDG--S---VQLADHYQqnt-piGDGPV----LLP-----DNHYLSTQSAL 297 Phytophthora pa...
EDO42459     142 LPSVETNIPRGN-TLVGDINMLLKVN----DG--SFLRVKFVTVYR------FMKPVPAGFKMP-----PHHFIAFKLTR 203 starlet sea ane...
EDO41650     197 LPSVETNIPRRD-TLLGDINMLLKVN----DG--SFLRVQFETVYR------FMKPVPAGFKMP-----PHHFMAYRLTR 258 starlet sea ane...
PFX12807     125 -----------------------ILR----TG--DGDKINLVETAEahvnplTKQPV----TLP-----PNHVVEHRILR 166 Stylophora pist...
PFX14646      79 DPSFEKMTVSEG-LLKGDVTMFLVLK----GG--GYHKCQFHTTYK------TKQPI----TLP-----PNHVVEHYIVR 136 Stylophora pist...
GAA89768     154 EWKGDQR------NLSAVVESEYYLNhnpeLPglHWRHVTFRTDKAikgiyiQSEKITVHRDLKevggePENLLARQLPV 227 Aspergillus kaw...
6M9X_A       198 QHSKTELTFKEWQKAFTDV 216 Florida lancelet
EEN59117     199 KASKTEITLCEKVKAFIDT 217 Florida lancelet
XP_002603213 202 TGSKTEIGLQEQQKAFSTV 220 Florida lancelet
EEN59118     201 DCSKTEVTLIEREKVFQDL 219 Florida lancelet
4DKM_D       196 KASDAEINLKEWQKAFHDL 214 Florida lancelet
4DKN_B       202 KATKTEVTLDEREKAFYEL 220 Florida lancelet
ETL77590     298 SKDPNEKRDHMIYFGFVTA 316 Phytophthora parasitica
EDO42459     204 VENDADCNVVLLHEWGKAF 222 starlet sea anemone
EDO41650     259 VDNDEHCDTVIQHEWSEAF 277 starlet sea anemone
PFX12807     167 TGDGDKINLVETAEAHVNP 185 Stylophora pistillata
PFX14646     137 TGDGDKVNLVEIAEAHVNP 155 Stylophora pistillata
GAA89768     228 EAKGREKTREEAEATQLNA 246 Aspergillus kawachii IFO 4308
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