Conserved Protein Domain Family
sigma70-ECF

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TIGR02937: sigma70-ECF 
RNA polymerase sigma factor, sigma-70 family
This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Statistics
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PSSM-Id: 274357
Aligned: 228 rows
Threshold Bit Score: 50.0384
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAB73333      66 SLAEGHLSAYL--QETCYWAAQRTIPQfasiqCT-LSDCFQMA---IAEVPKIL--KGCDPDqrASLKSY------GTVA 131 Nostoc sp. PCC ...
AAD35619      24 EAIDLIVEKYY--PMVVKIASQYFASW-----AE-HEDIVQNG---LVGLIKAI--FYYDKTk-SSFTSF------AWRS 83  Thermotoga mari...
AAO35703      31 QVRDKLIAKNDkePTVSEIAKELDIPRed--vVF-ALDAIQD----PLSLFE----PIYQDGg-DSIY------------ 86  Clostridium tet...
AAO62590      24 EALCELIAIVQ--QRAAIVLND-TRIS-----PQdFEDIVQET---VWGIYQKIcqPEFHLH--IPLHHY------INKT 84  Staphylococcus ...
AAO62591      24 EAIEKLV------HYVECIARK-SFDDfsvaqAD-CDDLVQDV---VIAIYQKIqsEEFYFG--IPFEHY------INRT 84  Staphylococcus ...
AAO62592      22 IELKAILQQFN--SFIMRRINYISQND-----FE-KDDLYQEV---LIKIYLALerHHFQYD--DSFIKY------ISRL 82  Staphylococcus ...
jgi:Dde_1928   5 NSYDGIDKYAA--DLIRHKARQLVGKAgf--tEDdRPDLEQEL---MIDLLQRM--RHFNPAk-AKKTTF------MARI 68  Desulfovibrio a...
P02964        38 DALDYLITKYR--NFVRAKARSYFLIG-----AD-REDIVQEG---MIGLYKSI--RDFREDklTSFKAF------AELC 98  Bacillus lichen...
P06227        13 FDPEYLFKKYE---LLRKSVYKKFKDKmi-nqSD-REDLMGTIdqiFLQLVS-----EYNPNrgVDFPYYik--rmLELR 80  Bacillus phage ...
WP_010053471  42 AKAVTDISKYC--QTCWRNAR--LPADr----WQ---DCTQAV---FVRLLE-----RVEAD------KWgavlvdSETS 96  Gemmata obscuri...
BAB73333     132 FGNIIRD---ALR---QKQ------EIDFcndwalllklsrkqlqeslkssgltdetmasyllawksftdgyiltkspka 199 Nostoc sp. PCC ...
AAD35619      84 VDSEIKSfltYLN---RKKnrmlsdAVNVdgm------------------------------------------------ 112 Thermotoga mari...
AAO35703      87 ----VMD---QIS---DTK------------------------------------------------------------- 95  Clostridium tet...
AAO62590      85 LYYKKMD----HR---RKRahqhhfLSQFie------------------------------------------------- 108 Staphylococcus ...
AAO62591      85 IHRRKLD---YRR---KKLthqrifENYVdg------------------------------------------------- 109 Staphylococcus ...
AAO62592      83 IKSVKCD---YYR---RHYtqqkryTNVVnd------------------------------------------------- 107 Staphylococcus ...
jgi:Dde_1928  69 VERHIST---ILE---ARFaqcrdwRLCQts------------------------------------------------- 93  Desulfovibrio a...
P02964        99 ITRQIIT---AIKtatRQK------------------------------------------------------------- 114 Bacillus lichen...
P06227        81 TYHHITK---YLK---RINgetslyVKNEdg------------------------------------------------- 105 Bacillus phage ...
WP_010053471  97 ERREFLR---AID---AVKkrtqraRKFA--------------------------------------------------- 119 Gemmata obscuri...
BAB73333     200 rklqkpeddtwDIIAQLYNRDRltqlnpsvrecnretleqwllfcakqarsylypvvsslnipkvgqadgewqddlpdts 279 Nostoc sp. PCC ...
AAD35619     113 ---------ekEEDDAPFEVPD---------------------------------------------------------- 125 Thermotoga mari...
AAO35703      96 -----------NLDDSWIENIA---------------------------------------------------------- 106 Clostridium tet...
AAO62590     109 ----------tYEAEYAYQ-IH---------------------------------------------------------- 119 Staphylococcus ...
AAO62591     110 ----------yAVGYRTQLAEQ---------------------------------------------------------- 121 Staphylococcus ...
AAO62592     108 ---------avVEYQTNLLNRD---------------------------------------------------------- 120 Staphylococcus ...
jgi:Dde_1928  94 ----------lNEPLDNGEGDTteridfldg------------------------------------------------- 114 Desulfovibrio a...
P02964       115 -----------HIPLNSYVSLDkpiydeesdrt----------------------------------------------- 136 Bacillus lichen...
P06227       106 ----------eVLELQDTIADM---------------------------------------------------------- 117 Bacillus phage ...
WP_010053471 120 -----------ALSHELPDRRP---------------------------------------------------------- 130 Gemmata obscuri...
BAB73333     280 nreslladliaaeeAETQKNQQQEIYNLLVTTLAKL-PPQSQQLLQLYYQQGLTQQQIAKQQEIQQYQVSRQLSKTRESL 358 Nostoc sp. PCC ...
AAD35619     126 --------------SETDVARSAFSGIILETVLELL-NEKEKEI-FLRWLDGCSYSEIAKELGVNTKKVDNTVQKVKRMI 189 Thermotoga mari...
AAO35703     107 ----------------------------IKEAMRNL-NKREKLILSLRFFDGRTQMEVADEIGISQAQVSRLEKTALKHM 157 Clostridium tet...
AAO62590     120 --------------KAQGDLFIEENFSEVQNQAQIL-SAFELKL-LYYLIEEWTPIEIAHQLNVSVKRVYNGIYRLRRKL 183 Staphylococcus ...
AAO62591     122 --------------QRHSHEYLHYIQDTLQQTLQQL-SSFEMHV-LDYLIAEWRPAEIARELNVSDKKVYNALYRIRQKL 185 Staphylococcus ...
AAO62592     121 --------------RVEREILTCEAIKLLNAACEKL-TKQEREV-FEFYSKGYKPKEIAHLLGIKDKVVYNAIQRCKMKI 184 Staphylococcus ...
jgi:Dde_1928 115 ------egslgggtRETRERLAHEIRMDLDRAIASL-PEELRDLCVRLH--DSTMAEIAREMGIPRTTLYDRLSKLREAF 185 Desulfovibrio a...
P02964       137 ---lldvisgakvmNPEELIINQEEFDDIELKMGELlSDLERKV-LALYLDGRSYQEISEELNRHVKSIDNALQRVKRKL 212 Bacillus lichen...
P06227       118 --------------HAEEIFSRIVDLHSINPYME-L-GEKHRNLMIGLFIRKKTLQELAQEEGVPLDRLHARLYFLIRKF 181 Bacillus phage ...
WP_010053471 131 -----------------VTNTTRDDRDAVAKAAEQL-SPRQRRILELTA-DGWPVPEIATELATTVERVSDEKYKAIKKL 191 Gemmata obscuri...
BAB73333     359 LLAI 362 Nostoc sp. PCC 7120
AAD35619     190 SGLG 193 Thermotoga maritima MSB8
AAO35703     158 RKFV 161 Clostridium tetani E88
AAO62590     184 KGAL 187 Staphylococcus chromogenes
AAO62591     186 KSLV 189 Staphylococcus intermedius
AAO62592     185 RHHL 188 Staphylococcus warneri
jgi:Dde_1928 186 SEAG 189 Desulfovibrio alaskensis G20
P02964       213 EKYL 216 Bacillus licheniformis
P06227       182 EKEH 185 Bacillus phage SPO1
WP_010053471 192 QHHF 195 Gemmata obscuriglobus
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