Conserved Protein Domain Family
PBP_like_2

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pfam12849: PBP_like_2 (this model, PSSM-Id:403911 is obsolete and has been replaced by 432831)
PBP superfamily domain
This domain belongs to the periplasmic binding protein superfamily.
Statistics
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PSSM-Id: 403911
Aligned: 65 rows
Threshold Bit Score: 64.1181
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q212Z2         21 S-ESANAQQSY------AFGVGATFPQIAYRQLADClfdqaqgsagkpgpLAKAASCPG----FNsgasgvlnsgtggli 89  Rhodopseudomon...
jgi:Cpin_7022  32 GeERDTPTSGT------IRISVDETYRPLMEAEIKV--------------FESLYKKAH----II--------------- 72  Chitinophaga p...
Q11TI5         26 StNASSTPVDS------VTVLCDPSWESIVRTFITT--------------YEGLNPHRK----VT--------------- 66  Cytophaga hutc...
jgi:Ctha_2174  93 NqEGETATKGY------ISVVAEKKIAELMDSVGVD--------------FMKYYEKNK----SQ--------------- 133 Chloroherpeton...
jgi:Ctha_2175  37 TeESETPTSGH------LKVATDDALAPVIQKQIDE--------------FSRIYPKAK----FD--------------- 77  Chloroherpeton...
jgi:Paes_1077  35 LkNEESPVSGT------LTVAADSLLAPVITRIGES--------------FVSYYPDA---------------------- 72  Prosthecochlor...
WP_011745173   44 AsREQSPTAGQ------LSISVDSPLYSIVNSQAQV--------------FSDHYPDAH----LL--------------- 84  Chlorobium pha...
Q8KDE6         38 AiSGDTPISGT------LAVAVDQSLTAVAGIQAAA--------------FSDQYPNAA----IK--------------- 78  Chlorobaculum ...
Q47MM1         56 GrFGCTSSSRS------LHVAAAPEIAPVLTRLAED--------------FNASDTAKDrcvtVE--------------- 100 Thermobifida f...
Q093C6         28 SdNGQSPRTQEqnlgpnKEFYGSDTLKEVLI-------------------AANVQSAAG----LT--------------- 69  Stigmatella au...
Q212Z2         90 lY---AGTGSGNGKLVLRTNDptqasapsssipwtdpsiaesladydgVQFIGSD--DVVTSSDVa--aWTARGnnatfG 162 Rhodopseudomon...
jgi:Cpin_7022  73 -A---EYKPEADCFKDLLNDs---------------------------SRLIFVT--RDFNEQETg--yIKEKK-----I 112 Chitinophaga p...
Q11TI5         67 -L---LVKPESECIHALLKDt---------------------------YRTVFVS--RNFTASEQa--fIEKKE-----W 106 Cytophaga hutc...
jgi:Ctha_2174 134 -VktlTAETNEEAVQKLLNEE---------------------------VRIAYIS--RQLTQEELe--qFKAKG-----F 176 Chloroherpeton...
jgi:Ctha_2175  78 -L---VENSTRKVVEMLLNKD---------------------------VRAVVFS--YKLSAKEDs--vINALG-----L 117 Chloroherpeton...
jgi:Paes_1077  73 -VldvQKKRTQDLIYDFAMGR---------------------------IQAAVLT--GEPTEEERa--vIDGNG-----R 115 Prosthecochlor...
WP_011745173   85 -V---KAELSSKTLLRLLQNE---------------------------SDAALIT--GDMIAAEDs--lFTRFG-----R 124 Chlorobium pha...
Q8KDE6         79 -L---SQESSRPVLRLLEKK----------------------------VDAALIE--GALSAREDs--lLSTLK-----H 117 Chlorobaculum ...
Q47MM1        101 -V---RGADSADVAYSITGAG---------------------------PTMGGTDsqVWIPDSTLwvktVQRDAgdddtI 149 Thermobifida f...
Q093C6         70 -I---EGKGSGVGEGCLRNGSspyc-------------------igrqQTLAPMS--RDFKAGTCpggtASGGAc---cP 121 Stigmatella au...
Q212Z2        163 NLIQIPALIGAVGLGYNgTDgagnplntlaGGLN-----LSRKALCGIVS-GHitqwnnailtadnggvlgAGNITFVHR 236 Rhodopseudomon...
jgi:Cpin_7022 113 APQSMLLAWDGVALITN-HS----------NPDTi----LTMDQVRKIMD-GTdst----------------qkrQIVFD 160 Chitinophaga p...
Q11TI5        107 GIHNDSLCYDGLTWIAP-KS----------FPKDs----LTLDEIKELFQsGTlnn----------------qayTIQLN 155 Cytophaga hutc...
jgi:Ctha_2174 177 DMSQILVVRDAVCLITN-PK----------NEVTt----MKVSQLKDVLS-GKitnwk--------elggkDMPIKFYTN 232 Chloroherpeton...
jgi:Ctha_2175 118 HVKKDLVARDALCLIVN-AK----------NPVKs----LSMNQLKLILS-GEaenws--------lfggkNQPIQVFYT 173 Chloroherpeton...
jgi:Paes_1077 116 SFRLEPVARGAVVCLVHtNS----------SSMN-----IGIDALHDLYTsGTs-----------------QEGLKPFIN 163 Prosthecochlor...
WP_011745173  125 RLRKEPVARDAVICIVN-RQ----------NPLAk----LSVGELSRLYAkREsgvmv---------rqgqERRFSAWIA 180 Chlorobium pha...
Q8KDE6        118 PVRRQPVARNALVFVVN-CA----------NPVYs----VSIANLKAIFS-GRltdwk--------slggsRGTIVACLD 173 Chlorobaculum ...
Q47MM1        150 VSTGTSVARSPLVLVTT-KDa--------vSDAEsedapLSWSDLVPTEAissqe-----------tapyqVHVIDPVHS 209 Thermobifida f...
Q093C6        122 GESSNAVALDAVSAFVR-ST----------TYSAlpnnsISTADLKKVFCgDGtgsastcvsnwsalgrptAGAIAKYRR 190 Stigmatella au...
Q212Z2        237 SDGSGTTFLFsNALATQcqfefgpnnetdttvvsyafpwtdrssgtsacplpvarganqnnwPDQFttdqcgtavanpgg 316 Rhodopseudomon...
jgi:Cpin_7022 161 NQNSSTVRYVlDSINKG---------------------------------------------KPLP-------------- 181 Chitinophaga p...
Q11TI5        156 SSGSSVANYLtERL--G---------------------------------------------VPPS-------------- 174 Cytophaga hutc...
jgi:Ctha_2174 233 KESEMLREVItDSLMDGt-------------------------------------------------------------- 250 Chloroherpeton...
jgi:Ctha_2175 174 SPNDARNMYLrDTLRIS--------------------------------------------------------------- 190 Chloroherpeton...
jgi:Paes_1077 164 GEHQRFQRLVmALIAPD--------------------------------------------------------------- 180 Prosthecochlor...
WP_011745173  181 GNDYRLVMAVrKLFHFE--------------------------------------------------------------- 197 Chlorobium pha...
Q8KDE6        174 GSNLRARTLLsEMLFGK--------------------------------------------------------------- 190 Chlorobaculum ...
Q47MM1        210 SAGLATLALVsNMVNRE---------------------------------------------EGAQ-------------- 230 Thermobifida f...
Q093C6        191 DDLSGTTDTFkSLVGCT---------------------------------------------TFCS-------------- 211 Stigmatella au...
Q212Z2        317 ghfASASG-------SGGVASRVgstlpSG-YGTIGYASVDyWAPVRvggspvanVQSQWditagtgqFRAPTaetaria 388 Rhodopseudomon...
jgi:Cpin_7022 182 ---S-DVMaak--tnPEVVDYVA-----KL-KNAIGVVGVS-WISDP--------NDSTS-----------IEft----n 225 Chitinophaga p...
Q11TI5        175 ---TKHIYtgg--ndEDIIRSVQ-----VH-KNALACISSS-WLVNL--------EDKRH-----------RDyl----a 219 Cytophaga hutc...
jgi:Ctha_2174 251 ---DFSLQpeslpsyRELWQKIK-----TE-EGALAYTSRRyAYRAL--------HNKKAfr------------------ 295 Chloroherpeton...
jgi:Ctha_2175 191 ---QFAAKaypctsaAQMREFVT-----KY-ESAIGYESISnLRDLT--------DPDRAg------------------- 234 Chloroherpeton...
jgi:Paes_1077 181 ---ARHLTawkaasdREVFETV------MRdPAAIGFLPVTsVR---------------AfmsemsgsPRLPV------- 229 Prosthecochlor...
WP_011745173  198 ---HETLSawqsrdsRELAGRI------SEdPDAVGLLFLSsFRtlsl-----------------------------nde 239 Chlorobium pha...
Q8KDE6        191 ---TEALSasaepdlPTLLDRVS-----KD-RYAAAIMTLPeYAASL--------RSG-Y-------------------- 232 Chlorobaculum ...
Q47MM1        231 ---TRFIAal----qNLQKSIAP-----DE-EAAFTLLSEAaDGESA--------APLLVlseqaawrHSTRT------- 282 Thermobifida f...
Q093C6        212 ---------------DVTVILDE-----SS-ANPAACATTDsATVCI--------GKLAAsnanaigyAGDSArr----t 258 Stigmatella au...
Q212Z2        389 mASAIPQFNAssraNPLAWSLQGVVPNPVvEGAYPISGFTWFEMYQCYaqhtgndaFGKFRSFLDYLYNDN 459 Rhodopseudomonas palust...
jgi:Cpin_7022 226 kVTVVKV-Rad-ygS--EF-VKPYQAYIA-LGSYPLKRGLFFCLKEPY--------GGLGSGFATFLGSYE 282 Chitinophaga pinensis D...
Q11TI5        220 sVKVLKIAKt----PSSEA-YSPFQNDLA-LGTYPFMRVLRVLNHDAN--------AGMGTAFASYFISNR 276 Cytophaga hutchinsonii ...
jgi:Ctha_2174 296 dTTSYKVMGLma-dTTDAESIAPYMYFVY-KDLYPLNYDIYSVFERY---------EDLAMGYSAFSTGPE 355 Chloroherpeton thalassi...
jgi:Ctha_2175 235 eQTEIKLLSVsa-dSVGAKAYLPLQSHVY-EGYYPLTYGVYHLYYEF---------ERLPQGFAAFL-SRE 293 Chloroherpeton thalassi...
jgi:Paes_1077 230 -IAAVTT-------GSENPAVLPSQDAIY-EGRYPLCYTLYYLYDPY---------LPLATGFGAWM-TEQ 281 Prosthecochloris aestua...
WP_011745173  240 aLQKIKVLAIss-nPDGDRPELPSQESIY-DGSYPLGVIVHYIYFQD---------NDLAAGFGSWL-SRE 298 Chlorobium phaeobactero...
Q8KDE6        233 -GSSIKAVPVs--aDAGGKPVAASPETIY-TGEYPLSTDIFYLYDPY---------NPLATGFGAWL-AKE 289 Chlorobaculum tepidum
Q47MM1        283 -GSTVYV-------------IYPE------DGTYTLDYPYVLRTNDPEv-------QLAAEDFRAFLTSRT 326 Thermobifida fusca YX
Q093C6        259 gNAALKVNGI----APTPANVRKLLASNP-AGVYPLSRKLFLNENVNYt------kTAEEQALYDWVYSTN 318 Stigmatella aurantiaca ...
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