3TMM,3TQ6,4NNU,6ERP,6HB4,6HC3


Conserved Protein Domain Family
HMG-box_TFAM_rpt1

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cd21986: HMG-box_TFAM_rpt1 
Click on image for an interactive view with Cn3D
first high mobility group (HMG)-box found in mitochondrial transcription factor A (TFA) and similar proteins
TFA, also called TFAM, mitochondrial transcription factor 1 (TF1), transcription factor 6 (TCF-6), or transcription factor 6-like 2, binds to the mitochondrial light strand promoter and functions in mitochondrial transcription regulation. It is a component of the mitochondrial transcription initiation complex, composed of at least TFB2M, TFAM and POLRMT that is required for basal transcription of mitochondrial DNA. TFA is required for accurate and efficient promoter recognition by the mitochondrial RNA polymerase. It can unwind DNA. It bends the mitochondrial light strand promoter DNA into a U-turn shape via its HMG boxes. TFA is required for maintenance of normal levels of mitochondrial DNA and may play a role in organizing and compacting mitochondrial DNA. TFA contains two HMG-box domains. This model corresponds to the first one.
Statistics
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PSSM-Id: 438802
Aligned: 11 rows
Threshold Bit Score: 89.1514
Created: 8-Apr-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:TFA forces promoter DNA to undergo a U-turn, reversing the direction of the DNA helix.
  • Structure:3TMM; Homo sapiens TFA binds DNA through its tandem HMG-box domains, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1       ## #####  ##  #   #       ##  ##  #  ##          #  #   #        
3TMM_A      42 PKKPVSSYLRFSKEQLPIFKAQNPDakTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEIS 107  human
3TQ6_A      10 PKKPVSSYLRFSKEQLPIFKAQNPDakTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEIS 75   human
4NNU_A      43 PKKPVSSYLRFSKEQLPIFKAQNPDakTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEIS 108  human
6ERP_C      10 PKKPVSSYLRFSKEQLPIFKAQNPDakTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEIS 75   human
6HB4_A       9 PKKPVSSYLRFSKEQLPIFKAQNPDakTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEIS 74   human
6HC3_A      20 PKKPVSSYLRFSKEQLPIFKAQNPDakTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEIS 85   human
Q00059      50 PKKPVSSYLRFSKEQLPIFKAQNPDakTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEIS 115  human
BAB78468    47 PKQPLSAYFRFLRDNQPAFRQQNPElnSLELVKKLAGVWRELPASQKQVYEEARKTDWRKYEEQLA 112  chicken
KZT37797  1953 DRRPLGPFMRFYVERKESDPSINSLs-LIDKSRRAGELWRALSDSEKQKYHDAFKKEFAEFKRTHA 2017 Sistotremastrum suecicum HHB10...
ORY05092    42 PKRPISAYLRFHRDNLLNRPVSKNT--VTDLSKRIGEKWNSLSDAEKKVYQDAEKEEYQEYLVKYK 105  Basidiobolus meristosporus CBS...
ORY32923   156 LARPNPPYIRYYREFLASSEAQGLP--MADSAKKAGANWKSMPDAQKKKYKDEYDAEFAKFKQASS 219  Naematelia encephala

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