6GSH,3ZUE


Conserved Protein Domain Family
Calici_coat

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pfam00915: Calici_coat (this model, PSSM-Id:366366 is obsolete and has been replaced by 459994)
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Calicivirus coat protein
Statistics
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PSSM-Id: 366366
Aligned: 6 rows
Threshold Bit Score: 395.025
Created: 16-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6GSH_A  108 GEVAKAwdpn-lpmFRLEADGDGS--ITAPEQG-T-PVGGVIAEPSAQMSAAADMATGKSVDs--EWEAFFSFHTSVNWS 180  Feline calicivirus
Q83884    2 MMASKD--------ATSSVDGASGagQLVPEVN-A-SDPLAMDPVAGSSTAVATAGQVNPID---PWIINNFVQAPQGEF 68   Norovirus Hu/1968/US
P89681  137 LRSTADvns--nftFRAESDGPGSteIVTEEQG-T-IVQQQPAPAPTALATLATASTGKSVEq--EWMTFFSYHTSINWS 210  Vesicular exanthema...
Q66915  108 gevaKAwdpn-lplFRLEADDg---sITAPEQG-T-VVGGVIAEPSSQMSTAADMASGKSVDs--EWEAFFSFHTSVNWS 179  Feline calicivirus ...
P27410 1768 GKARAApqgeaagtATTASVPGTTtdGMDPGVV-AtTSVITAENSSASIATAGIGGPPQQVDqqeTWRTNFYYNDVFTWS 1846 Rabbit hemorrhagic ...
3ZUE_A    4 karTAPqgea-agtATTASVPGTTtdGLDPGVVaT-TSVVTAENSSASIATAGIGGPPQQVDqqeTWRTNFYYNDVFTWS 81   Rabbit hemorrhagic ...
6GSH_A  181 TSETQ---GKILFKQSLGPLLNPYLEHLAKLYVAWSGSIDVRFSISGSGVFGGKLAAIVVPP--GVDPVQSTSMLQYPHV 255  Feline calicivirus
Q83884   69 TISPNntpGDVLFDLSLGPHLNPFLLHLSQMYNGWVGNMRVRIMLAGNAFTAGKIIVSCIPPgfGSHNLTIAQATLFPHV 148  Norovirus Hu/1968/US
P89681  211 TVESQ---GKVLYSQALNPSINPYLDHISKLYSTWSGGIDVRFTVSGSGVFGGKLAALLVPP--GVEPIESVSMLQYPHV 285  Vesicular exanthema...
Q66915  180 TSETQ---GKILFKQSLGPLLNPYLEHLSKLYVAWSGSVEVRFSISGSGVFGGKLAAIVVPP--GVDPIQSTSMLQYPHV 254  Feline calicivirus ...
P27410 1847 VADAP---GSILYTVQHSPQNNPFTAVLSQMYAGWAGGMQFRFIVAGSGVFGGRLVRAVIPP--GIEIGPGLEVRQFPHV 1921 Rabbit hemorrhagic ...
3ZUE_A   82 VADAP---GSILYTVQHSPQNNPFTAVLSQMYAGWAGGMQFRFIVAGSGVFGGRLVAAVIPP--GIEIGPGLEVRQFPHV 156  Rabbit hemorrhagic ...
6GSH_A  256 LFDARQVEPVIFSIPDLRSTLYHLMSD-TDTTSLVIMVYNDLINPYANDsnSSGCIVTVETKPGADFKFHLLKPPgsMLT 334  Feline calicivirus
Q83884  149 IADVRTLDPIEVPLEDVRNVLFHNNDRnQQTMRLVCMLYTPLRTGGGTGd-SFVVAGRVMTCPSPDFNFLFLVPP--TVE 225  Norovirus Hu/1968/US
P89681  286 LFDARQTEPVIFTIPDIRKTLFHSMDe-TDTTKLVIMVY----KNGADT--KTTCSITVETRPSADFTFALLKPPgsLIK 358  Vesicular exanthema...
Q66915  255 LFDARQVEPVIFTIPDLRSTLYHLMSd-TDTTSLVIMVYNDLINPYANDsnSSGCIVTVETKPGSDFKFHLLKPPgsMLT 333  Feline calicivirus ...
P27410 1922 VIDARSLEPVTITMPDLRPNMYHPTGDpGLVPTLVLSVYNNLINPFGGS--TSAIQVTVETRPSEDFEFVMIRAPssKTV 1999 Rabbit hemorrhagic ...
3ZUE_A  157 VIDARSLEPVTNTMPDLRPNMYHPTGDpGLVPTLVLSVYNNLINPFGGS--TSAIQVTVETRPSEDFEFVMIRAPssKTV 234  Rabbit hemorrhagic ...
6GSH_A  335 HGSVPs--DLIPKSSSLWIGN-RHWTDITDFVIRP---FVFQ-ANRHFDFNQETAG---WSTPRYRPITITI 396  Feline calicivirus
Q83884  226 QKTRP---FTLPNLPLSSLSNsRAPLPISSMGISPdnvQSVQfQNGRCTLDGRLVGttpVSLSHVAKIRGTS 294  Norovirus Hu/1968/US
P89681  359 HGSIPs--DLIPRNSAHWLGN-RWWSMISGFSVQP---RVFQ-SNRHFDFDSTTTG---WSTPYYIPIEITI 420  Vesicular exanthema of swin...
Q66915  334 HGSVPs--DLIPKTSSLWIGN-RFWSDITDFVIRP---FVFQ-ANRHFDFNQETAG---WSTPRFRPITVTI 395  Feline calicivirus (strain ...
P27410 2000 DSISPaglLTTPVLTGVGNDN-RWNGQIVGLQPVP---GGFStCNRHWNLNGSTYG---WSSPRFGDIDHRR 2064 Rabbit hemorrhagic disease ...
3ZUE_A  235 DSISPaglLTTPVLTGVGNDN-RWNGQIVGLQPVP---GGFStCNRHWNLNGSTYG---WSSPRFADIDHRR 299  Rabbit hemorrhagic disease ...
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