1FYT,1HXM,1HXM,1KB5,1NFD,1RHH,2ADG,2ARJ,2ATP,2OTU,2UV3,3KHQ,1AKJ,1AO7,1AQK,1BD2,1BWM,1CD0,1D9K,1DL7,1FYT,1IQD,1J8H,1KTK,1LIL,1MI5,1MI5,1NFD,1NFD,1OGA,1OGA,1QLR,1RHH,1SQ2,1TVD,1VES,1XIW,1XIW,1YJD,1YMM,1YPZ,1YPZ,1ZGL,2AK4,2ATP,2C1O,2COQ,2D9C,2ESV,2ESV,2EYR,2EYR,2F53,2IAL,2JJS,2JJU,2JJV,2JJW,2NW2,2P5E,2WNG,2YZ1,2Z35,3B9K,3D85,3DGG,3DMM,3KG5,4CMM,4I2X,4I2X,4KJY,5CMA,5DFV,6W41,6W41


Conserved Protein Domain Family
IgV

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cd00099: IgV 
Immunoglobulin variable domain (IgV)
The members here are composed of the immunoglobulin variable domain (IgV). The IgV family contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology, and are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E and, D strands in one sheet and A', G, F, C, C', and C" strands in the other.
Statistics
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PSSM-Id: 409355
Aligned: 165 rows
Threshold Bit Score: 47.7141
Created: 1-Nov-2000
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:1NFD, human T cell receptor alpha/beta interface, contacts based on 3.5 A distance.
    View structure with Cn3D
  • Structure:1RHH; human monoclonal antibody Fab X5 heterodimer, showing light and heavy chain interface, contacts based on 3.5 A distance.
    View structure with Cn3D
  • Structure:2ADG, mouse monoclonal anti-Cd4 antibody Q425, Fab light and heavy chain interface, contacts based on 3.5 A
    View structure with Cn3D
  • Structure:1HXM, human T cell receptor gamma/delta interface, contacts based on 3.5 A distance.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                          # # # #        # #                             
1FYT_D          3 VTQLGs-HVSVSeGALVLLRCNYsss----vpPYLFWYVQYpn---qgLQLLLKYtsaatl---------vkgingFEAE 65   human
1NFD_A          3 VTQTEg-LVTVTeGLPVKLNCTYqtt---yltIAFFWYVQYln---eaPQVLLKSstdnkr----------tehqgFHAT 65   Mus musculus
2ARJ_R          7 LRIFPk-KMDAElGQKVDLVCEVlgs----vsQGCSWLFQNsssklpqPTFVVYMasshnkitw---deklnssklFSAM 78   house mouse
1AKJ_D          3 FRVSPl-DRTWNlGETVELKCQVlls---nptSGCSWLFQPrga-aasPTFLLYLsqnkpkaa------egldtqrFSGK 71   human
2ATP_A          7 LRIFPk-KMDAElGQKVDLVCEVlgs----vsQGCSWLFQNsssklpqPTFVVYMasshnkitw---deklnssklFSAM 78   house mouse
AAQ73501       29 FRMSPr-ELVAQvGTKVTLRCEVlvp---napAGCSWLFQPrhd-akgPTFLLYHsasgtkla------pgleqkrFSPS 97   domestic guin...
ABA55041       10 ARFLNrnMKHPQeGQPLELECLPfn-----idNGVSWIRQEkd---gkLHFIVYIspfsrttfp----rnertssqFEGS 77   chicken
XP_001379394  213 FRMNPveKRDAGqGRELKLQCETvns----spTGCSWLRLTpga--vvPTFLLYLsgssqsvkv----apeldsrrFGGS 282  gray short-ta...
ABL09456      159 LMESG--GGSHKtGNTLKLKCQTsgfq--fktSKLGWYHWTpg---haPRSLTSLdsisa------------dpieERIT 219  northern brow...
Q93033        149 ATMSSq-TLGKEeGEPLALTCEAskataqhthLSVTWYLTQdg---ggSQATEIIslskdfilvpgplyterfaasDVQL 224  human
Feature 1                              # # #             ###      
1FYT_D         66 FKksetSFHLTKPsahmsdaAEYFCAVSespfg-neklTFGTGTRLTI 112  human
1NFD_A         66 LHksssSFHLQKSsaqlsdsALYYCALSeggn---ykyVFGAGTRLKV 110  Mus musculus
2ARJ_R         79 RDtn-nKYVLTLNkfskeneGYYFCSVIsns-----vmYFSSVVPVLQ 120  house mouse
1AKJ_D         72 RLg--dTFVLTLSdfrreneGYYFCSALsns-----imYFSHFVPVFL 112  human
2ATP_A         79 RDtn-nKYVLTLNkfskeneGYYFCSVIsns-----vmYFSSVVPVLQ 120  house mouse
AAQ73501       98 KSs--nTYTLTVNsfqkrdeGYYFCSVSgnm-----mlYFSPFVPVFL 138  domestic guinea pig
ABA55041       78 KQg--sSFRLVVKnfraqdqGTYFCIANinq-----vlYFSSGQPAFF 118  chicken
XP_001379394  283 RSs--sSYFLTLKdfqkddqGYYYCVVArns-----rlFFSPFVPVFM 323  gray short-tailed opossum
ABL09456      220 ISreetGISLQIEglglrdsGQYHCVRRvgngddidqlIFGPGKDVTV 267  northern brown bandicoot
Q93033        225 NKlgptTFRLSIErlqssdqGQLFCEATewi-----qdPDETWMFITK 267  human

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