3SAO,2KT4,2LBV


Conserved Protein Domain Family
lipocalin_Ex-FABP-like

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cd19439: lipocalin_Ex-FABP-like 
extracellular fatty acid-binding protein
Ex-FABP (also known as siderocalin, lipocalin Q83 or protein Ch21) displays a dual ligand binding mode as it can bind siderophore and fatty acids simultaneously. ExFABP has a cavity which extends through the protein and has two separate ligand specificities, one for bacterial siderophores at one end, and other specifically binding co-purified lysophosphatidic acid (LPA), a potent cell signaling molecule, at the other end. As well as acting as an LPA "sensor", Ex-FABP is bacteriostatic, and tightly binds the 2,3-catechol-type ferric siderophores enterobactin, bacillibactin, and parabactin, associated with enteric bacteria and Gram-positive bacilli. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.
Statistics
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PSSM-Id: 381214
Aligned: 5 rows
Threshold Bit Score: 252.202
Created: 8-May-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:fatty acid binding site [chemical binding site]
Evidence:
  • Comment:Ex-FABP displays a dual ligand binding mode as it can bind siderophore and fatty acids simultaneously
  • Structure:2LBV: Coturnix japonica Ex_FABP bound with arachidonic acid, contacts at 4A
  • Structure:3SAO; Gallus gallus Ex-FABP bound with a substrate analog, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #   # #                     # # #       ###              #                # #
3SAO_A         5 RSEVAGKWYIVALASNTDFFLAEKgkMKMVMARISFLgedELEVSYAApspkgCRKWETTFKKTsddgeVYYSEEAEKTV 84  chicken
XP_006022782 239 KNKLTGKWYLTGVASTCDWLQKRKgdMTMMPADISLTkegEVLFSMAFssqgkCKKMETTFKETek-sgEFYSEEYRKTA 317 Chinese alligator
2KT4_B         6 RSEIAGKWYVVALASNTEFFLREKdkMKMAMARISFLgedELKVSYAVpkpngCRKWETTFKKTsddgeVYYSEEAKKKV 85  Japanese quail
2LBV_A         6 RSEIAGKWYVVALASNTEFFLREKdkMKMAMARISFLgedELKVSYAVpkpngCRKWETTFKKTsddgeVYYSEEAKKKV 85  Japanese quail
P21760        27 RSEVAGKWYIVALASNTDFFLREKgkMKMVMARISFLgedELEVSYAApspkgCRKWETTFKKTsddgeLYYSEEAEKTV 106 chicken
Feature 1         #  # #     # #            # #                                
3SAO_A        85 EVlDTDYksYAVIFATRVKDgRTLHMMRLYSRsrevsPTAMAIFRKLARERNytdEMVAVLP 146 chicken
XP_006022782 318 QViKIDYehYGIFYSFWTVDeKVCRELKLLTRiqeltPETEALFRQLAEERDfsdDLIAIFF 379 Chinese alligator
2KT4_B        86 EVlDTDYksYAVIYATRVKDgRTLHMMRLYSRspevsPAATAIFRKLAGERNytdEMVAMLP 147 Japanese quail
2LBV_A        86 EVlDTDYksYAVIYATRVKDgRTLHMMRLYSRspevsPAATAIFRKLAGERNytdEMVAMLP 147 Japanese quail
P21760       107 EVlDTDYksYAVIFATRVKDgRTLHMMRLYSRsrevsPTAMAIFRKLARERNytdEMVAVLP 168 chicken

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