Conserved Protein Domain Family
PAF

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pfam15715: PAF (this model, PSSM-Id:406206 is obsolete and has been replaced by 464819)
PCNA-associated factor
Statistics
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PSSM-Id: 406206
Aligned: 15 rows
Threshold Bit Score: 74.181
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002131342   1 MVRTKATVn-----SaAFRASAAKAPRKNVAAPSRSSAFEIGSP---AGKKNQSVGGNPVCQRPTPDWQKPIASFFtt-- 70  vase tunicate
XP_011403116   1 MVRTKANN------AcTRKAVAAKAPRKSLGGGGGGVRHNFTSPssaGRKKGKGVGGNPIRVHPTPAWQKGIDLFMgggs 74  Amphimedon quee...
KFM66535       1 MVRTKADA---------YTKAASKAPRKQHILRGGNSPAASKN-----GKVNKYAGGNPYCPRPTPSWQKPITSFF---- 62  Stegodyphus mim...
XP_001607698   1 MVRTKADAa-------VRVAAGGKAPKKTANRAPQSPAPSSDK------GGKDNLPGNRYCPRETPAWQKKITFFYnknd 67  jewel wasp
EEB17226       1 MVKTHSNP--------KNIRVTAKAPRKSTTTRPTDLSTS---------SGRKYTSLNNYVPRPVPAWQKEITTFFhr-- 61  human body louse
1_pfamImport   1 MVRTKASVt-----SaAIRASAAKAPRKNFTASSSHSSVDFSSP----SGKKNNVGGNPVCPRPTPDWQKPIATFFq--- 68 
XP_001375098   1 MVRTKADCvp--gsY--RKVVAARAPRKVLGHSSFANSSPSPLS---RKAESKYAGGNPVCVRPTPTWQKGIGEFF---- 69  gray short-tail...
XP_003778522   1 MVRTKADSvp--gtY--RKVVAARAPRKVLGSSTSATNSTSVSS---RKAENKYAGGNPVCVRPTPKWQKGIGEFF---- 69  Sumatran orangutan
XP_019332925   1 MVRTKAGCggaggaY--RKVVAARAPRKVLGPSSSVNSGSSPPT---KRVESKYAGGNPVCVRPIPTWQKGIGEFF---- 71  American alligator
EKC28576     165 MVRTKADGgs---sSaSRKVVAARAPRKALGGSGPSSSASNSP----SGKSAKYAGGNSACPRPTPDWQKGINSFF---- 233 Pacific oyster
XP_002131342  71 ---------kLPSAKsNgdtdlveklfepvdketpdepekmetsDDKENQNPevsDEAGPSTS----RPTKTKRRRILTI 137 vase tunicate
XP_011403116  75 s-----ketaASSSSsRs-------------------------eENKENFPK---GKGKRGVSgkerHKGEKDTAAAVID 121 Amphimedon quee...
KFM66535      63 -------------AKcD---------------------------EQEENMPP----EASACAS----ETSQLPTEENQMI 94  Stegodyphus mim...
XP_001607698  68 demnessssqANDA------------------------------DEKQN------------------SSGEEMKKNKPLD 99  jewel wasp
EEB17226      62 -------------------------------------------mEESDSSGP---------------STSENNLNTH--- 80  human body louse
1_pfamImport  69 ----------SKPTKsQseadlveklfep---aqdeenmevemlDNKENENPespEEPVTS------RTTKIKRRRILMI 129
XP_001375098  70 ----------GMSSK-P---------------------------SEKENQIP---DEAEAGSS----GLGKPKRKSYPL- 103 gray short-tail...
XP_003778522  70 ----------RLSPK-D---------------------------SEKENQIP---EEA--GSS----GLGRAKRKACPL- 101 Sumatran orangutan
XP_019332925  72 ----------RQSPG-S---------------------------SRKENQVLd-dEEA--GSS----GKGRSSKKACPL- 105 American alligator
EKC28576     234 -----------QSPQ-----------------------------KGKENQSPsdsESAGGGSS----QGSSSSASSCPDS 269 Pacific oyster
XP_002131342 138 QESDSETEevlsgekpstsgekpstsgekpstsgekPSTSGEKPStsGEKPSTSGEQP 195 vase tunicate
XP_011403116 122 VEEMNNDEddreqdeeteeineqseeeredeeleelKSEDEEEEV--EEEEEIEEDDI 177 Amphimedon queenslandica
KFM66535      95 AVDDQQPCc--------------------------sGYRPEPGPSgsNDVKDFSSDDD 126 Stegodyphus mimosarum
XP_001607698 100 DSNEMDVK----------------------------ESDRSPSKTkvIKTEDCDDDNE 129 jewel wasp
EEB17226      81 -------------------------------------------------QEDQESEES 89  human body louse
1_pfamImport 130 QDSDSDTE----------------------------------------DQPSTSGDQP 147
XP_001375098 104 -------------------------------------------------RPDPTEDDE 112 gray short-tailed opossum
XP_003778522 102 -------------------------------------------------QPDHTNDEK 110 Sumatran orangutan
XP_019332925 106 -------------------------------------------------PPDPTEDDA 114 American alligator
EKC28576     270 GRYKKDSr---------------------------gTCRLTLTTAwnGTKADISARER 300 Pacific oyster
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