Conserved Protein Domain Family
lipocalin_6

?
cd19426: lipocalin_6 
Epididymal-specific lipocalin-6
Epididymal-specific lipocalin-6 (LCN6) may play a role in male fertility. It belongs to the lipocalin/cytosolic fatty-acid binding protein family which has a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.
Statistics
?
PSSM-Id: 381201
Aligned: 4 rows
Threshold Bit Score: 306.539
Created: 7-Jan-2013
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
ligand binding
Feature 1:ligand binding cavity [chemical binding site]
Evidence:
  • Comment:hydrophobic cavity binds different hydrophobic ligands; ligands are bound within the beta-barrel in a central internal water-filled cavity lined with polar and hydrophobic amino acids
  • Comment:based on lipocalin/cytosolic fatty-acid binding protein family members with structure

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                   #   #                       # #       # # #            # # #        #
P62502        20 AVWLGRLDPEQLLGPWYVLAVASREKGFAMEKDMKNVVGVVVTLTPENNLRTLSSQHGLGGCDQSVMDLIKRNSGWVFEN 99  human
ACS36664      21 AVWLGRLDPKQLLGPWYVLAVASRAKDFMVEKDMKNVEGVVVTLTPDNKLRVESSRHGPGGCHQSTVELLKQESRWVFEN 100 house mouse
XP_003941408  20 AVWLGRLDPKQLLGPWYVLAVASREKSFAVEKDMKNVAGVVVTLTPENNLRMLSSEQGLEGCSQSVTELLKRNSGWVFEN 99  Bolivian squirr...
P62503        20 AMWLGRLDPKQLLGPWYVLAVASREKSFAVEKDMKNVAGVVVTLTPENNLRLLSSQHGLQGCSQSVTELLKRNSGWVFEN 99  Rhesus monkey
Feature 1         #   # # #        # # #          # # #                          
P62502       100 PSIGVLELWVLATNFRDYAIIFTQLEFGDEPFNTVELYSLTETASQEAMGLFTKWSRSLGFLSQ 163 human
ACS36664     101 PSLGILDYRVLGTNFKDYAVVFTQLEFGDEVFNTVSLYSRTEMASHEAMQLFTKWSQGLGFLSQ 164 house mouse
XP_003941408 100 PSIGVLEFRVLGTNFRDYAIVFTQLEFGDEPFNTVQLYSRTETASQEAMGLFTKWSRGLGFPSQ 163 Bolivian squirrel monkey
P62503       100 PSIGVLELRVLATNFRDYAIIFTQLEFGDEPFNTVELYSRREAASQEAMGLFTKWSRGLGFLSQ 163 Rhesus monkey

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap