4G24


Conserved Protein Domain Family
PRORP

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pfam16953: PRORP 
Protein-only RNase P
PRORPs (protein-only RNase P) are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. Arabidopsis thaliana contains PRORP enzymes (PRORP1, PRORP2 and PRORP3) where PRORP1 localizes to mitochondria as well as chloroplasts, while PRORP2 and PRORP3 are found in the nucleus. In humans and most other metazoans, mt-RNase P is composed of three protein subunits (mitochondrial RNase P proteins 1-3; MRPP1-3), homologs to the Arabidopsis thaliana PRORP1-3. This domain corresponds to the metallonuclease domain of PRORPs. PRORP1 has 22% sequence identity to the human homolog MRPP3. PRORP1 crystal structure shows a V-shaped tripartite structure with a C-terminal metallonuclease domain of the NYN (N4BL1, YacP-like nuclease) family, with a typical and functional two-metal-ion catalytic site that has conserved aspartate residues.
Statistics
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PSSM-Id: 465320
Aligned: 17 rows
Threshold Bit Score: 333.166
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4G24_A       267 MDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVK------ANF-NQFQEWLERHGPFDAVIDGA-NM-GLVNQ 337
EHB02977     341 IQKSGQCSGCGNTIESIHLSPEEYDFLKKKVMKDVIDGGDQyrkttpQEL-KRFENFVKSHPPFDIVIDGL-NVaKMFSK 418
B5DF07       342 IQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQykkttpQEL-KRFERFVKSCPPFDIVIDGL-NVaKMFPK 419 Norway rat
XP_012901688 342 IKESGQCSGCGKTMESIHLSPEEYEFLKGEIMRDVIDGGDQykkttpQEL-KRFQSFVKCCPPFDIVIDGL-NVaKTFPK 419
XP_003435980 275 ITDGGKCSSCKGTLSSIVVSEDMFQSLRDKFLTAVLINKEIfnrttpEEL-NRFQAFLAKTLPYDVVIDGL-NVaFSSGN 352
Q9W413       288 LGGLGKCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVfqrstpEEV-ARFKKFVEKTAPYDCVIDGL-NVaYSTGT 365 fruit fly
XP_002009750 295 LELFGKCSTCQQNLQHVAISDAQFAELRESFLQKVLIRNDVfqkttpQEL-QRFKQYVEKTAPYDCVIDGL-NVaYSTGN 372
XP_002064272 283 VNRLGKCLHCHQHLQPVAISDEQFQQLRESFLEKVLIRHDVfqkstpEEV-ERFKAYVERTLPYDCVIDGL-NVaYSMGT 360
XP_009380560 473 VSTDGVCMACGDKLVTMDLDPIETENFANSVASLANKRERN------SNF-HKFQKWLDYYGPFEAVVDAA-NI-GLFSQ 543 wild Malaysian ...
XP_005989235 342 INNSGECRSCQKHLESIQLSEDEYNELRTKVMKEVIEGRDVfkktnpLELeSFQKFVQKRCP-YDVVIDGLnVAnISVKG 420 coelacanth
4G24_A       338 RSFsffqLNNTVQRCQQISPS-KrLPLVILHKSRVnggpATYpkNRALLEKWKNAGALYATPPG---------------- 400
EHB02977     419 ARE----SQFLLDVVSLLAKQ-K-LQLLVLGRKHMlkqrSRW--RRDEMEKVKKQASCFFADDI---------------- 474
B5DF07       420 GRE----SQNLLGIVSQLAQQ-N-LQLLVLGRKHMlrpsSQW--RKDEMEQVRKQAHCFFADNI---------------- 475 Norway rat
XP_012901688 420 VRE----SQVLLDVVSQLAKQ-N-LQLLVLGRKHMltqhSRW--RKDEMKKVQQQASCFFADNI---------------- 475
XP_003435980 353 QKSpivyAQQVAAVVRHYVRQ-K-KRVLVIGRKHM----DKW--RSREMKYIRENSFLFLTDDLyvwvsgllestvtyft 424
Q9W413       366 KKTpqqlAKLVATVVRHFREQ-D-KRVLVLGREHM----RNW--SKQAMHYVHCNASLFLTSNL---------------- 421 fruit fly
XP_002009750 373 KKPpaqlAKLLATVVRYFKER-R-KRVLVLGRQHM----SNW--SKPAMQYIQSNASVFLTNNL---------------- 428
XP_002064272 361 KKSpaqlAQLVANVVRYFRER-R-KRVLVLGRQHM----RQW--SKSAMHYIQANASLFLAQNL---------------- 416
XP_009380560 544 RRFsinkvnAVVNAIRQKLPMkR-WPLIIVHNKRLtggkMNAplNMKLLEKWKYADAIYETPTG---------------- 606 wild Malaysian ...
XP_005989235 421 KRS-----QILLEVVSHLAEQ-N-LRLLLLGRKHMlkgtNSW--ERRHMAAIQEKADCFFTENI---------------- 475 coelacanth
4G24_A       401 -----SNDDWYWLYAAVSC--KCLLVTNDEMRDHLFQLLgNS---FFPRWKEKHQ-VRISVTREDGLKLNMPPPYSIVIQ 469
EHB02977     475 -----SQDDLFLLYATLNSgnHCKFITNDLMRDHKACLFdAKtkhLFFKWQQGHQlAIRSVFPGSHITFHHSLHYDTVVQ 549
B5DF07       476 -----SEDDPFLLYATLNSgsHCKFITKDLLRDHKACLPdARaqrLFFKWQQGHQlAITKGFLKSKLTFQHILSYDTVVQ 550 Norway rat
XP_012901688 476 -----SEDDPFLLYATLHSgnHCKFITKDLMRDHKACLRnAKtqrLFFKWQQGHQlAIVNRLTRSKITFQHIPSYNTVVQ 550
XP_003435980 425 fapfrSQDDPFLLYAALESgpKTDFFSRDLMRKHSFMLG-NElsgVFKRWQQEHQySLLSIMPDGRVLIKAPFKYELYAH 503
Q9W413       422 -----SHDDPFLLYATLRSgqETDFFSRDLMRSHAFHLG-TElkpIFRRWQQEHQfSLVTQTQTGQIIVKEPVRHRLCAH 495 fruit fly
XP_002009750 429 -----THDDPFLLYATLRSgqDTDFFSRDLMRAHAHLLG-TElkaIFRRWQQEHQySLVTQTQTGQIIVKEPIRYRLSAH 502
XP_002064272 417 -----SHDDPFLLYATLKSgqDTDFFSRDLMRSHAHLLG-PDlkpIFRRWQQEHQhSLVAQTQTGQIVVKEPIRFRLTAH 490
XP_009380560 607 -----SNDDWYWLYAAIKC--KCLIVTNDEMRDHIFQVLgND---FFPRWKERHQ-VHFSFHEG-SFEFDMPPPCSIVIQ 674 wild Malaysian ...
XP_005989235 476 -----SEDDPFLLYATLYSgnHCKFLSRDLMRDHKACLSdGIarrLFFKWQRGHQlLLSYYSPGKRIQFENVLNYDTIIQ 550 coelacanth
4G24_A       470 ESEDg--TWHVPMSVE------DDLQTSR-----QWLC 494
EHB02977     550 TTGD---SWHIPYDEDlv--erYSYEVPT-----KWLC 577
B5DF07       551 TTGD---TWHIPYDEDlv--prSSCEVPT-----KWLC 578 Norway rat
XP_012901688 551 TTGD---SWHIPYDEDtv--erYTYEVPT-----KWLC 578
XP_003435980 504 KSCDn--RWHVPLVEL-------GYRIPKvekqnDWLC 532
Q9W413       496 QVAD---TWHVPYCAQytphptDSFEVPA-----NWLC 525 fruit fly
XP_002009750 503 KVGN---VWHVPYCEAytanppDSFEVPE-----KWLC 532
XP_002064272 491 HLREdemSWHVPYCETytpkppDSFEIPE-----QWLC 523
XP_009380560 675 ENERg--HWHIPISTVq------EQERER-----TWLC 699 wild Malaysian banana
XP_005989235 551 TTED---TWHIPYDEDev--erCSYEVPR-----KWLC 578 coelacanth
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