4I62,4H5F


Conserved Protein Domain Family
PBP2_GltS

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cd13620: PBP2_GltS 
Click on image for an interactive view with Cn3D
Substrate binding domain of glutamate or arginine ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily.
This family comprises of the periplasmic-binding protein component (GltS) of an ABC transporter specific for glutamate or arginine from Lactococcus lactis, as well as its closely related proteins. The GltS domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis
Statistics
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PSSM-Id: 270338
Aligned: 13 rows
Threshold Bit Score: 283.077
Created: 16-Mar-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:4I62; periplasmic amino-acid binding protein from Streptococcus pneumoniae binds L-arginine, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #  #   #                                     #                ####    
4I62_A        36 KSKGKLVVALNPDFAPFEYQkvvd-gknqIVGSDIELAKAIATELGVELELSPMsFDNVLASVQSGKADLAISGVSKTDE 114 Streptococcus p...
ABR36888      47 KSKGKLVIGTSADYPPYEFHkevd-gkdkIVGFDIDIAQEIAKDLGVELEVKDMaFDGLLVALQSDKIDMVFAGMTPTDE 125 Clostridium bei...
NP_357695     32 KSKGKLVVALNPDFAPFEYQkvvd-gknqIVGSDIELAKAIATELGVELELSPMsFDNVLASVQSGKADLAISGVSKTDE 110 Streptococcus p...
EFM64001      42 KANGKLVVGTAPGYPPFEFVvdks-gksqVVGADIDLAKKIADEIGVKLEIKAMdFDALIMALQSSKVDMVITSMTPTEE 120 Peptostreptococ...
ACS99735      56 KKAGKIVLGTSAEYAPYEFHknvd-gkdqIVGFDIEIAKEVAKDLGVDLEIKDMdFGNLLAELKLGKIDFVIAGMTPDEE 134 Paenibacillus s...
NP_561516     43 KESGKLVVGLSADYAPYEFHimkd-gkdqIVGLDIDIAKEVAKNLGVDLEIKEMeFGAIIQSVKNGMIDMGISGITPDEK 121 Clostridium per...
CAL28337      44 KKRGVLKVGLSADYAPLEFEshkn-gkreYVGIDIDIAKKIAKDNGLKLEIVNMnFDSLLGALKTGKIDMIISGMTPTPE 122 Staphylococcus ...
YP_001254520  42 KESGKLVVGTCADYPPYEFHktin-gkdeIVGFDITIAKEIAKDLGVKLEIKDMkFDGLLAALQSGNVDIVIAGMNPTED 120 Clostridium bot...
EFO02053      25 KQKGKLVVATSPDYAPFEFQslvd-gknqVVGADIDMAQAIADELGVKLEISSMsFDNVLTSLQTGKADLAIAGISATDE 103 Streptococcus o...
YP_001844194  36 KDKKVLTMGTSADYAPFEFTimkn-gkkeYVGYDIMVAQKIADSLGVKLKVQNMeFSSIISELQDHKVDIALAGMNVTPQ 114 Lactobacillus f...
YP_001620641  36 SYDEYITMGTSADYAPYEWLvkdennnqtVVGIDIEIAKVIAKHAGKNLKVIHKgFDFLLEDLADGRVDFVISAMTPTPE 115 Acholeplasma la...
NP_266719     34 KKAGVLKVALSPDYPPFEFQiikd-gkntVVGSDVDLANAIGKKLGVKVKIESMdFNNVLASLNTGKADIAISGISKEPS 112 Lactococcus lac...
4H5F_A         9 KQKGKLVVATSPDYAPFEFQslvd-gknqVVGADIDMAQAIADELGVKLEILSMsFDNVLTSLQTGKADLAVAGISATDE 87  Streptococcus p...
Feature 1        #                                          #  ###                               
4I62_A       115 RSKVFDFSTPYYTAkNKLIVKKSdlaty--qsvnDLAQKKVGAQKGSIQETMAKDLlqnsSLVSLPKngNLITDLKSGQV 192 Streptococcus p...
ABR36888     126 RKQNADFSDIYYTAtHRFVLRSGdeagi--tkmeDLKNKKIGVQKGSIQEGIAKDNfdaaNIKSLDKvtDLILDLKNNKV 203 Clostridium bei...
NP_357695    111 RSKVFDFSTPYYTAkNKLIVKKSdlaty--qsvnDLAQKKVGAQKGSIQETMAKDLlqnsSLVSLPKngNLITDLKSGQV 188 Streptococcus p...
EFM64001     121 RKKSVDFSDVYFEGtNSIIVNINfskdi--skedDLKNIVLGVQRGSVQEIYAKEVlkapKIKSLTAipDLIADMKNGNI 198 Peptostreptococ...
ACS99735     135 RAKAVDFSKVYYEAkQGVLVRAEdkdkf--ttmaDLEGKAIGVQMGSTQEKIAQGIkg-aKLKSLGKttDLVLELKSKKV 211 Paenibacillus s...
NP_561516    122 RKEAVDFSDIYYEAeQGILINKDnkesi--kgigDLKGKKVGAQMGSIQAEIAKGIeg-aDVKLLDNvnTLILELKTGKL 198 Clostridium per...
CAL28337     123 RKKEVDFSDSYLKSgQTMVVKKTnidky--kslkDFANKRIGAQKQTTQEELAKNEienaDIQSMTRlpEVIMALKSGKT 200 Staphylococcus ...
YP_001254520 121 RKKSVDFSKIYYQAiQSVVVRAEdkdkf--ksleEFKGKKIGVQKGTTQEEVAKKEmtnsEIKSLGKvtDLVLELQNKKV 198 Clostridium bot...
EFO02053     104 RKEVFDFSIPYYENkMSFLVRKAdldky--kdlsSLASANIAAQKGTVPETMVKEQlpnaQLISLTNmgEAVNELQAGKV 181 Streptococcus o...
YP_001844194 115 RKKAVDFSKPYYTEqESLLVKKAdadky--ntiaDTKGASFGVQQSSTQETIAKTQtk-aKLVSESLvtGLATDLKSGKL 191 Lactobacillus f...
YP_001620641 116 RAEIVDFSTVYYMAtQVVLIETKnmdvytsvasmNLSNIRIGAQLGSIQQDYANDLfdapQKQFIQAvpDLVLGLTSGQL 195 Acholeplasma la...
NP_266719    113 REKSVNFSDVYYTAsNYLVVKKSdlsky--rsvdDFKGKKVAAQKGSTQEGIVTSQfkgaTEIALPQigDEINEVKGGQV 190 Lactococcus lac...
4H5F_A        88 RKEVFDFSIPYYENkISFLVHKAdveky--kdltSLESANIAAQKGTVPESMVKEQlpkaQLTSLTNmgEAVNELQAGKI 165 Streptococcus p...
Feature 1             #                              #                                    
4I62_A       193 DAVIFEePVAKGFve-nNPDLAIADLnfek-eqddSYAVAMKKDSk-ELKEAVDKTIQKLKEsGELDKLIEDA 262 Streptococcus pneumoni...
ABR36888     204 DAVLAEqPVAQINvd-kNEGIAIADKlevk-dpdgGSAIAMKKGSt-DLTDQVNKTIKRLKDeDKIKQFVLDA 273 Clostridium beijerinck...
NP_357695    189 DAVIFEePVAKGFve-nNPDLAIADLnfek-eqddSYAVAMKKDSk-ELKEAVDKTIQKLKEsGELDKLIEDA 258 Streptococcus pneumoni...
EFM64001     199 DGIIAStVVAKINan-qYEGIKLIDVnlsq-ankeEAAIAIKKGEnkALLDIVNKTIKSLKDsGQYEEILNKN 269 Peptostreptococcus sto...
ACS99735     212 DALIVElPVAQGYan-vNSDLALTSIspey--esgGSAVAVNKGEk-DLLAEIQKTLDHLTAdKKIDQWVSEM 280 Paenibacillus sp. JDR-2
NP_561516    199 DAVITElPVAKIAse-vNSELAVADEvikn--segGSAIAIQKGNk-DLVDKVNSTIKELKEnGKIDQFTNDA 267 Clostridium perfringen...
CAL28337     201 DGAIIEgPVAEAYlq-qNPELGFAKVkfse--pdkDTCIALPKESp-IFLDKLNTSIKDIKDkGLITKYKESA 269 Staphylococcus carnosu...
YP_001254520 199 DGLVLEnPVAVSYak-nGKNLAVSNIkfen--kdkGASVAVKKGNk-DLVDAIDKTLDKLIKeKSIDKFVTDA 267 Clostridium botulinum ...
EFO02053     182 DAVHMDePVALSYag-kNSDLVVASVnltm-kdgeANAVAIKKDQs-DLKAVVDKVIQKLKD-DGTYQTYLEK 250 Streptococcus oralis A...
YP_001844194 192 DGVVLAkKVAEQYvaqyPDTYAIAKVkitapasmkEISIAIPKDEp-KLKAAVNKEITKLQKsGELDKLFKKA 263 Lactobacillus fermentu...
YP_001620641 196 AGVIMEkPVAEGYin-nMTSLSIANFtlgn--pedGSAVAVRKGNk-ALLELINDTIQILQEsGQIEQFVKDS 264 Acholeplasma laidlawii...
NP_266719    191 QGAVIEnLIAKSYva-aNSDLAIANVdvktpkdsyGSAVALPKGSd-ELTKVVNSVIKEELKnGQINKDIQKN 261 Lactococcus lactis sub...
4H5F_A       166 DAVHMDePVALSYaa-kNAGLAVATVslkm-kdgdANAVALRKNSd-DLKEVVDKVIQKLKDeGTYQSYLEKA 235 Streptococcus pneumoni...

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