Conserved Protein Domain Family
rexB_recomb

?
TIGR02774: rexB_recomb 
ATP-dependent nuclease subunit B
DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important; this model represents specifically RexB proteins as found in Streptococcus and Lactococcus. [DNA metabolism, DNA replication, recombination, and repair]
Statistics
?
PSSM-Id: 274291
Aligned: 4 rows
Threshold Bit Score: 1732
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
AAK99843    2 KLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLEYLSQQASFSITVTRFAQMARYLVLNDLPAKTTL 81   Streptococcus pne...
AAM99759    2 KLLYTDINHDMTEILVNQAAHAAEAGWRIFYIAPNSLSFEKERAVLENLPQEASFAITITRFAQLARYFTLNQPNQKESL 81   Streptococcus aga...
AAK33716    2 KLIYTEMSYSMTEILVNEARKAADQGYRVFYIAPNSLSFEKEREVLTLLPERGTFSIIVTRFVQMSRYFTVESSPSKQHL 81   Streptococcus pyo...
BAB62753    2 RLLYTAIRDNLTDQLAQLAHEQALSGRRVFYIAPNSLSFEKERRVLETLKEKASFNITITRFAQMARYFVLNDVSDKKPV 81   Streptococcus cri...
AAK99843   82 DDIGLGLAFYKCLAELDPKDLRVYGAIKQDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRADLLLIFEKVTAYLNQG 161  Streptococcus pne...
AAM99759   82 NDIGLAMIFYRALASFEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILELKYLHSPEKFEDLLAIFLVVSDLLREG 161  Streptococcus aga...
AAK33716   82 DDTTLAMIFYRALMQLKPEDLPSYGRLQNNSVFIEQLVELYKELKNAQLSVHDLTGLDHPQKQEDLIKIIELAETIMIQQ 161  Streptococcus pyo...
BAB62753   82 TDTGLAMIFFRILSQFEEGDLKIYGSLRKDINFIQQLVDLYKELQRSNLTIFDLDELASDLKYQDLTAIFSAFYQVLEEE 161  Streptococcus cri...
AAK99843  162 QLAQESQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHGKGVEIVIGAYASKKAYTSPFSEGNLYQASV 241  Streptococcus pne...
AAM99759  162 EYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSLSSRCQEIIIGAYASQKAYKANFTNGNIYSAGV 241  Streptococcus aga...
AAK33716  162 DYNQDSPLQSFARAIKLGLLNNQLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSFIKGNIYEASL 241  Streptococcus pyo...
BAB62753  162 NFEAQTKIAQFLEHVSSGELDQVLKNLVVIVDGFSRFSAEEEALVSALHEKGVDIIIGTYASQKAYKSSFLGGNLYQANV 241  Streptococcus cri...
AAK99843  242 KFLHHLASKYQTPAQDCSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLHE 321  Streptococcus pne...
AAM99759  242 DFLRYLATTFQTKPEFILSKWESKSGFEMISKNIEGKHDFTNSSHILDDTAKDCITIWECINQKDEVEHVARAIRQKLYQ 321  Streptococcus aga...
AAK33716  242 HFLQDLAQKYHIKPVFATSNQVFKPAFSRLTQLFEATHDFSQVDWQLQKSDLDHFSLWQCHHQKEEIEHVAKSIRQKLYE 321  Streptococcus pyo...
BAB62753  242 EFLLDLGQKFGLQAEYIG--HSSGDNLAHLSDYLEARHDFSVDLPRLTDQDKQALTIWDVVSQKEEVEQVAREIRHLLND 319  Streptococcus cri...
AAK99843  322 NsdLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILALKRYRFRQEDLINLLRTDLYTDLS 401  Streptococcus pne...
AAM99759  322 G--YRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEIS 399  Streptococcus aga...
AAK33716  322 G--YRYKDILVLLGDMDAYQLQIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFD 399  Streptococcus pyo...
BAB62753  320 G--VRYKDILVLLGDPESYQLQIGKIFKKYDIPFYFGKAEPMSHHPLANFIESLERIKRYNFRAEDVLNLLKSGLFKDFK 397  Streptococcus cri...
AAK99843  402 QSDIDAFEQYIRYLGINGLPAFQQTFTKShHGKFN----------LERLNVLRLRILAPLETLFASRKQKAEKLLQ-KWS 470  Streptococcus pne...
AAM99759  400 QDDLDYFEAYISYADIKGPKKFFTDFVVG-AKKFD----------LGRLNTIRQSLLTPLESFVKTKKQDGIKTLN-QFM 467  Streptococcus aga...
AAK33716  400 DSDIDRFEEYTQFADIKGFTKFSKPFTINsSRQYP----------LDFLNEMRQDIVLPLQELFKSQKQLGASLVD-KLI 468  Streptococcus pyo...
BAB62753  398 DTDIDKFDQYLKYADIKGQAQFKKAFTANvQQGFDddgqalykydLDALNQTRRVLLEPLLELFSSRALLGENLLNkKFL 477  Streptococcus cri...
AAK99843  471 VFLKEGAVTKQLQDLTTTLEAVEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLV 550  Streptococcus pne...
AAM99759  468 FFLTQVGLSDNLSRLVGQMSENEQEKHQEVWKTFTDILEQFQTIFGQEKLNLDEFLSLLNSGMMQAEYRMVPATVDVVTV 547  Streptococcus aga...
AAK33716  469 LFLKKIRLAENMQGLA--QSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTI 546  Streptococcus pyo...
BAB62753  478 PFLQAIDLPANMAKLAHGKSEQELEKEEEVWKTLTDLLAEMAAIFGQEKLKIDDFLALLQAGMQASSYRTVPATLDVVTV 557  Streptococcus cri...
AAK99843  551 QSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQ---ATEEGVQLLIASSENLKKNRYTMLSLVNSARKQ 627  Streptococcus pne...
AAM99759  548 KSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLISDIERQLIND---ANDTDGHFDIMTQENLKKNHFAALSLFNAAKQE 624  Streptococcus aga...
AAK33716  547 KSYDLVQPHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINE---IRNYR-HFDIASAENSKKNHQTALSLFNAATKE 622  Streptococcus pyo...
BAB62753  558 KDYELIEPHTSPYVFALGLTAGNFPRIHKNSSLITDEDRLALNDrlaASERQGHFDLPNQENIKKNHSAMISLLNSATQK 637  Streptococcus cri...
AAK99843  628 LFLSAPSLFNESESKESAYLQELIHFGFRRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGE-MSDTEQDLTFVKVLSR 706  Streptococcus pne...
AAM99759  625 LVLTIPQLLNESEDQMSPYLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIdKEMTKEEQTFWSVAVR 704  Streptococcus aga...
AAK33716  623 LVLSVSTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLSQIIAINRQDL-IEMSDQDKMFWTVVLR 701  Streptococcus pyo...
BAB62753  638 LVLSAPQIFNENEDKFSPYLQDLLDMGVPLISKSAVSFEEDT-DLGTYKALLSRVIEANQLSQtEDLSKDQATFWSVMVR 716  Streptococcus cri...
AAK99843  707 VIGKKLDQQGLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLHPDARSHGN 786  Streptococcus pne...
AAM99759  705 YLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLKLSSSALTTFYNNQYKYFLQYVLGLEEQDSIHPDMRHHGT 784  Streptococcus aga...
AAK33716  702 YLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIHPDSRIHGQ 781  Streptococcus pyo...
BAB62753  717 RLRQKLAQQDIAIPTITDDLTVEPISQEVLDILYPSDQPLRLSASSLTTFYNNQYAYFLNHVLRLEEEESIHPDFRHHGV 796  Streptococcus cri...
AAK99843  787 FLHRIFERALQLP-NEDSFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEEAnfg 865  Streptococcus pne...
AAM99759  785 YLHRVFEILMKNQ-GIESFEEKLNSAINKTNQEDVFKSLYSEDAESRYSLEILEDIARATATILRQDSQMTVESEEE--- 860  Streptococcus aga...
AAK33716  782 YLHRVFERLMKDH-TQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNIQVIDQEK--- 857  Streptococcus pyo...
BAB62753  797 YLHKIFERVMAQTeGSEDFDALLNQVINQVSQEETYRILYETDQEGRLTQDILLDIAHSTAPILRDNSAVQVLGRAEaqh 876  Streptococcus cri...
AAK99843  866 ------------------gkdQAFIQLDNg-rSVFVRGKVDRIDRLKANgAIGVVDYKSSLTQFQFPHFFNGLNSQLPTY 926  Streptococcus pne...
AAM99759  861 ---------------------RFELMIDN---TIKINGIIDRIDRLSDG-SLGVVDYKSSAQKFDIQKFYNGLSPQLVTY 915  Streptococcus aga...
AAK33716  858 ---------------------NFQLDMGN---EILVHGIIDRIDQLSDG-SLGIVDYKSSANQFDIGTFYNGLSPQLMTY 912  Streptococcus pyo...
BAB62753  877 ylgdkdwqktpqalkalevnfNYQLPITAhqrQLEIRGQIDRLDQLSSSdSLGIVDYKSGDKKFNLADFYNGLTPQLLTY 956  Streptococcus cri...
AAK99843  927 LAALKR----EGEQNFFGAMYLEMAEPVQSLMAVKSLA-GAVVEASKSMKYQGLFLEKESSYLGEFYNKNKANQLTDEEF 1001 Streptococcus pne...
AAM99759  916 IDAISRdkevEQKPPIFGAMYLHMQEPRQDLSKIKNLD-DLVTKNHQALTYKGLFSEAEKEFLANGKYHLKDSLYSETEI 994  Streptococcus aga...
AAK33716  913 LAALKQiaphDIN-QLFGAMYLHLQDPKLDLVTFKQIDnTLVESIYKALTYKGIFSEVEKEHLSTGAYQTKNALYSNDEL 991  Streptococcus pyo...
BAB62753  957 ILALKEqmpsDYQAPIFGATYLHMQDPEIRFKDLKNLD-DAAGVLAKTFKYQGLYDAQQASHLARYYNTSKANKFSQEEL 1035 Streptococcus cri...
AAK99843 1002 QLLLDYNAYLYKKAAEKILAGRFAINPYTENGRSIApyVQQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKL 1077 Streptococcus pneumon...
AAM99759  995 AILQAHNQSLYKKASETIKSGKFLINPYTEDAKTVD--GDQFKSITGFEADRHMARARALYKLPAKEKRQGFLTLM 1068 Streptococcus agalact...
AAK33716  992 ETLLNYNKYLYLKAAKHIKKGHFLINPYTSDGKTVQ--GDQLKAITRFEADLDMGQARRLVTLPAKEKKECFLTLM 1065 Streptococcus pyogene...
BAB62753 1036 DLLLTYTKALYRKAAQTILSGRFAINPYTKDGRSVQ--GDQLKSITGFEADRHMKYARRLI----KAKREDYLASM 1105 Streptococcus criceti
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap