Conserved Protein Domain Family
Pathogen_betaC1

?
pfam09593: Pathogen_betaC1 
Beta-satellite pathogenicity beta C1 protein
Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing.
Statistics
?
PSSM-Id: 401507
Aligned: 36 rows
Threshold Bit Score: 130.755
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q08EU7         2 TIKYNTEKGMEFTIDVKITRDNSIIVQIELFSTQSPALAKKTFMIPYGHDGIITPFNFNALEGGIKNLLKIMYKDSNIGE 81  Tomato leaf cur...
YP_001210298   2 TITYSNGNGIKFIIDVRLQQ--FISVSVQVYSTNQAILTGFNCNIPYTYEQIIAPFDFNGTEEIIRNTLELMYEDSDVSN 79 
BAF49383       2 TIIYNNGKGIKFIIDVRLQQ--FIKVQVQVYSTNQPVLTGIRCNIPYRYVQMVPPFDFNGTEELVRDTLELMYDDSDISN 79 
Q6I6F8         2 TITYNNGRGIKFIIDVRLHQ--IIRVIVQVYSTNQPVLTGFKCNIPYTYVQMVPPFDFNGGRGAYQGHTGIWYDRSDISN 79  Honeysuckle yel...
BAF75929       2 TITYNNGKGIKFIVDVRLHQ--LLKVIVQVYSTNKPVLTGFKCHIPYTYVQMVPPFDFNGAEELIRETLELMYEDSDISN 79 
BAF64265       2 TITYDNGKGIKFIVDVRLHQ--IIRVLVKVYSTNQPVLTGFKCDIPYTYAHMVLPFDFNGTEELIRDTLELMYDGSEFSN 79 
AAL05305       2 TITFRSTKGVHFRVDVFLKDD-HIECRIEVTATKEAYLRKSTFIIPYHFADVFIPFDFNGSEEEIMHGLRNMFKDFTHQM 80 
ABN80228       2 TRFSKNREGIVFKVDVKLMQQQRISVQMQISSTRSPAISTKTFIIDYTYQQLHIPFDFNGLEGTITSTFKFHYWGSKAEE 81 
Q3L3M8         2 TTSGTNKKGVRFIVDVRIMENMKIFIHMRILSTKSPSLIKYEGIIQYTYEDIHVPFDFNGFEGSVIANFLFAYNGAKIEE 81  Cotton leaf cur...
Q4VYH1         2 TRSGINTQGVRFTVDVRIMEGMRLFIHMKLVSTRTPAIIKYEGIVKYTYGDLLIPFDFNGFEANIIANFLFAYNGAKIEK 81  Malvastrum yell...
Q08EU7        82 FRQEDMVETIDLLMMEEAPLVDIRIGDEYDVCTNVCV 118 Tomato leaf curl Karnataka betasatellite
YP_001210298  80 FQVEDMIETIDILMTEMFTDMGVETMRRCIVRHKYTV 116
BAF49383      80 FKQEEMIDSIDMVMMHWLSDMGVDTVDKYVVRNTYTV 116
Q6I6F8        80 FKQEEMIDSIDMVMMHWLSDMGVDTVEKYSIRCIHTV 116 Honeysuckle yellow vein betasatellite
BAF75929      80 FKQEEMIDSIDMVMMHWLGHMGVDTVDRYTIRCRNTV 116
BAF64265      80 FKQEEMIDSIDMVMMHSLTHMGVDTVDRYDVRSSYTI 116
AAL05305      81 IRTEELVDVVDMVMAENVNVLGMDLLNHYRIINKSSV 117
ABN80228      82 ILEEDIIHMVDIIIIENPEIMGMDVNEPVTIDNKIII 118
Q3L3M8        82 IEIEDIVHRLDILVLENPEILGMDVIEPYIFNKKFTV 118 Cotton leaf curl betasatellite
Q4VYH1        82 IDIVDIVERLDIFVLENHEIIGMDVIEPYVFNKTFTV 118 Malvastrum yellow vein betasatellite
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap