Conserved Protein Domain Family
LytD

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COG4193: LytD (this model, PSSM-Id:226656 is obsolete and has been replaced by 443347)
Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]
Statistics
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PSSM-Id: 226656
Aligned: 6 rows
Threshold Bit Score: 204.724
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15927349   27 FSMISDQIFFKHVKSDIKIEKLNVTLNDAAKKQINNYTSQqvSNKKNDAWRDASATEIKSAMDSGTFidnEKQKYQFLDL 106  Staphylococcus au...
729969    630 TATSTVTADVLNIRSTPEVSPTNVIGQFKKGDKVKVIGQIngWAKINLGWRNASSDEVVQYVDPNNFsrdSKYYFQFLKL 709  Bacillus subtilis
15895592  517 GKTTSQSFKITKLVGVDASSTKYNTSLSQLVDKQMQYGEP--VTESGSSWVSADRSTVQYYANPNNFl-dSYGIYQFLVL 593  Clostridium aceto...
1703465  1000 sngklawikstdlakelikynqtgmtlnqvaqiqaglqykpqvqrvpgkwtdakfndvkhamdtkrlaqdpalkyqflrl 1079 Staphylococcus au...
15927887   14 LIVILVVFAVLLIVNETKLFKNDVNYSFDEAVSMQQGKGIvqTKEEDGKFVEANNNEIAKAMTISHK---D-NDMKYMDI 89   Staphylococcus au...
18285815  432 isglsgymktedlqaldaskdfipyyesdghrfyhyvaqnasipvashlsdmevgkkyysadglhfdgfklENPFLFKDL 511  Streptococcus pne...
15927349  107 SKYQGIDKNRIKR----MLVDRPTLLKHTDDFLKAAKDKHVNEVYLISHALLETGAVKSELANGVEIDG--------KKY 174  Staphylococcus au...
729969    710 SQTAGLSVTEVNQk---VLAGKGILTGRAKAFIDAANQYSINELYLISHALLETGNGTSALANGLTYNG--------KTV 778  Bacillus subtilis
15895592  594 NYQSGITVDEVNN----MLVGKGVLQGHGGAFLQSAQQNNISVFYLVSHALLETGNGTSALAKGMNVNG--------TIV 661  Clostridium aceto...
1703465  1080 dqpqnisidkinQ----FLKGKGVLENQGAAFNKAAQMYGINEVYLISHALLETGNGTSQLAKGADVVNnkvvtnsnTKY 1155 Staphylococcus au...
15927887   90 TEKVPMSESEVNQ----LLKGKGILENRGKVFLEAQEKYEVNVIYLVSHALVETGNGKSELAKGIKDGK--------KRY 157  Staphylococcus au...
18285815  512 TEATNYSAEELDKvfslLNINNSLLENKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAK----DK----------- 576  Streptococcus pne...
15927349  175 YNFYGVGALDKDPIKTGAEYAKKHGWDTPEKAISGGADFIHKHFLSS--TDQNTLYSMRWNPKNPGEHQYATDIKWAESN 252  Staphylococcus au...
729969    779 YNMYGIGAYDSNPNYYGAKYAYEQGWFTPEAAIIGGAKFIGSSYIHNtaYNQDTLYKMRWSAT--ATHQYATDIGWAYKQ 856  Bacillus subtilis
15895592  662 YNMFGINALDSNPNYYGSQFAYKQGWTTVDKAIIGGASWIGSSYINNssYAQNTLYKMRWNPANPGTHQYATDVRWAYNQ 741  Clostridium aceto...
1703465  1156 HNVFGIAAYDNDPLREGIKYAKQAGWDTVSKAIVGGAKFIGNSYVK---AGQNTLYKMRWNPAHPGTHQYATDVDWANIN 1232 Staphylococcus au...
15927887  158 YNFFGIGAFDSSAVRSGKSYAEKEQWTSPDKAIIGGAKFIRNEYFEN---NQLNLYQMRWNPENPAQHQYASDIRWADKI 234  Staphylococcus au...
18285815  577 NNFFGITAYDTTP------YLSAKTFDDVDKGILGATKWIKENYID----RGRTFLGNKASGMN---VEYASDPYWGEKI 643  Streptococcus pne...
15927349  253 ATIIADFYKNMKTEGKYFKYFVYK 276  Staphylococcus aureus subsp. aureus N315
729969    857 VNRMYSLYSLLDGYTLYFDVPEYR 880  Bacillus subtilis
15895592  742 IYNIKKLIDMCTSPILKFDIPSFN 765  Clostridium acetobutylicum
1703465  1233 AKIIKGYYDKIGEVGKYFDIPQYK 1256 Staphylococcus aureus
15927887  235 AKLMDKSYKQFGIKKDDIRQTYYK 258  Staphylococcus aureus subsp. aureus N315
18285815  644 ASVMMKINEKLGGKD--------- 658  Streptococcus pneumoniae
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