3FYS,3LUP,3PL5,1MGP,2G7Z


Conserved Protein Domain Family
DegV

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TIGR00762: DegV 
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EDD domain protein, DegV family
This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General]
Statistics
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PSSM-Id: 273257
Aligned: 144 rows
Threshold Bit Score: 173.039
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3FYS_A        37 IAVVTDSTAYIPKEMreqHQIHMIPLQVVFREETYRE--EIELDWKSFYEEVKKHNELpTTSQPPIGELVALYEElGKSY 114 Bacillus subtilis
WP_011025751   4 IAIVTDSLSDIPEDLiktYGIFVVPLTINIDGKSYKD--GVDIKKEEFYKLLREGK-MpTTTQASPVEFMEVFEDlLKSF 80  Caldanaerobacte...
WP_011098676   4 IKIITDSTADLSKEIidkYDIEVIPLLVTFGEESYKD--GIDINTSELLRKMESSEEFpGTAQITPQRFIECYKKyLQEG 81  Clostridium tetani
WP_010964020   4 IKIVTDSTCDLPEYIiskFDIEVLPLMVNVKGKSYFD--IVDINFKQLSKIMDEENIFpTTSQVTPKRFNDCFAKyLKEG 81  Clostridium ace...
WP_009888355   4 LKIICDSLSDVPKDLldkYDIDIVSLTVILEEREYKD--RIDISGDEFYKRLREENVYpKTSQATYAQFKEIFEKyTNED 81  [Clostridium] d...
WP_011948024   4 IKIITDSTADLPKDIiekYDIEVIPLFVSFGDKVYKD--GVDIKLEQLFTKIEKENVFpQTSQVNPQRFYEHYKKyIDKG 81  Clostridium bot...
WP_011459581   2 IKILADSTCDLSQEVlekYKIDIAPLTICIKDKDYRD--RIDITPDEFYGFIEDLDAPpTTSMPSPAEYLKIFKRaIQEG 79  Desulfitobacter...
WP_021421473   3 IKLVCDSLCDIPDEIsekDYIEIVPLTVIFNDREYIE--GVDIKKEEFYKKVKEIKQIpKTSQATYMEFKEVFDKfITEG 80  [Clostridium] d...
WP_011592288   4 IKIITDSTCDLSKEIiekYDIDVMPMLINFGEESYLD--GVEIKVDSMMERIEREDLLpTTAQIVPTRFIEKYKGyLEEG 81  Clostridium per...
WP_003641280   2 YQLLTDSTVDLPYQLlkdKHVDFVSMNVTIDDQEYADdlGHHFDLTDFYHRIGN-GVMpSTAQINIGQFIEFFKPyVQAH 80  Lactobacillus p...
3FYS_A       115 -DAVISIHLSSGISGTFSSAAAAD----SMVDN----I--D-VYPFDSEISCLAQGFYALKAAELIKNGASsPEDIIKEL 182 Bacillus subtilis
WP_011025751  81 -DYVIAIILTSKFSGTYQSAVIAR----DMVDK----N--R-IEVIDSRHFTLGNGMLVLKAARMAVEGAS-KEEIVSTV 147 Caldanaerobacte...
WP_011098676  82 -YKIISLHLSSKMSGTYQSACLAK----EILEA----N--EtIEIIDSQNVTSGLGLLVIKAARLRDEEYN-LEEIVKEV 149 Clostridium tetani
WP_010964020  82 -YKIICINMSSKMSGTYQSACIAK----DMLES----E--D-VVVIDSLNVTSGLGVLVLKACRLREEGKS-FEEIKNEI 148 Clostridium ace...
WP_009888355  82 -REILYIAGSATATGTYQSAVMAK----NDVDG-------K-IYTYDSNLLCMGTGLLVIKAGELASEGKS-VDEILPVL 147 [Clostridium] d...
WP_011948024  82 -YSIISIHISSKMSGTYQSACLAK----DMLDS----D--N-ITVIDSNNVTSGLGLLVIKACKLKDEGLS-MEEIVKGV 148 Clostridium bot...
WP_011459581  80 hSSILCICMSSGTSGSYQSAVIARdyffEEHPE----MtdR-VHVVDSKSMSHGSGWLILKSARMRENGAA-FAELVEFN 153 Desulfitobacter...
WP_021421473  81 -YHIICMTGAANASGTFQSAMIAK----NDVNE----Ne-K-IHIFDTRNLSLGSGQYVIKACELFEEGLG-FEEIIDEL 148 [Clostridium] d...
WP_011592288  82 -YKVISIHISSNMSGTYQSACLAK----AELES----D--D-IVVIDSRNVTVGLGLIVLKAARLIESGIT-LEDLEKEI 148 Clostridium per...
WP_003641280  81 -TPILYLGFSSGLSGTFNNAQQAK----TMLLQdqpdA--E-IYLVDSRAACCGEGLMLLDAIDKRDAGMP-IAQLADWL 151 Lactobacillus p...
3FYS_A       183 EEMKKTVRAYFMVDDLAHLQRGGRLSSAQAFIGSLLKVKPILHFDN-KVIVPFEKIRTRKKAISRIYELLDEDASKG-L- 259 Bacillus subtilis
WP_011025751 148 YETIPRIRGIMVFDSLDYLYRGGRLSRTQSIIGGILNVKPILTNED-GELKVIDKVRGQKKAIRWIIDYMKNTGIDF-A- 224 Caldanaerobacte...
WP_011098676 150 RRTIPHIKSGLVFEELTNLVKGGRLSKTAGVVGNILGIRPILTVEN-GEMAVIDKVRGNKKAIRYVLDYIGQ-VGIK-K- 225 Clostridium tetani
WP_010964020 149 IETIPHVKSALAFERLDNLIKGGRLSKTAGTIGNLLGIKLILEVKD-GEMAIKDKVRGNKKAARVVLDCIKDESMNK-E- 225 Clostridium ace...
WP_009888355 148 DELKEKAFVIFSVDTLEYLQKGGRISSTKAAIGSILNIKPILEIRD-GLVSQISQVRGKKNVISKMMELIKSNCGDD-Ls 225 [Clostridium] d...
WP_011948024 149 KETIPHIKSVLAFETLDYLVKGGRLSKTAGFIGNVLGIKPILAVEN-GEMVVKDKVRGSKKAIRAIFEYIGK-LGLK-Q- 224 Clostridium bot...
WP_011459581 154 EAHKTSVKHYLSVDDLDHLIRSGRLTNASAFVGKLLKLKPIMTMKK-GKGAIVAKERARKKVLEHYVSEFSRRVNDE-L- 230 Desulfitobacter...
WP_021421473 149 ENTRSSVRLLFAPYTLDFLKQSGRVPVATALIGNMLNIKPIFFFDN-GEAKLVNKVRGIKNIASKLVDIILEMNEGSlE- 226 [Clostridium] d...
WP_011592288 149 LEYRNHIKSTIAFESLDNLVRGGRLSKGKALFVSALGIKLMLNVLD-GEMNVQGKIRGTKKMVKAMIEQFDSIPKKE-G- 225 Clostridium per...
WP_003641280 152 TENRLYYHQWFTVDDLNYLYHGGRVSRTSATVGSLLQIKPVMDVDPlGHLRPVQKVRSRRRSLTTLVNNTLADLRDQ-T- 229 Lactobacillus p...
3FYS_A       260 PMRAAVIHANREEEAAKIIEELSAKYPHV-EFYNSYFGAVIGTHLGEGALGICW 312 Bacillus subtilis
WP_011025751 225 EREVGLIHTDKEEFLNEIEAALRSELEIT-RFIRSQAGCGIGTHAGPDAAGVFF 277 Caldanaerobacter subterraneus
WP_011098676 226 DEPCILLHIENEDIRIPLEEHLQEK--SI-EFMECEVGCVVGVHSGKRACGIFF 276 Clostridium tetani
WP_010964020 226 ETTL-LLNAENDDILPILRQKLIEQEN---KFIECEVGCVVGAHSGTKACGVFF 275 Clostridium acetobutylicum
WP_009888355 226 DQIVYIGYSDDFKEKEQLSKVMQDELRPK-EIRFFQIGVCIGAHAGPGVTGIIC 278 [Clostridium] difficile
WP_011948024 225 GEPCILLHVQNKDILGTLRENLNQD--EA-NFIECTVGCVVGIYAGPRACGIFF 275 Clostridium botulinum
WP_011459581 231 TDFIIIGYTSDITYAENLKHKIERDTAYKgDIFIMQMGVAVGTHVGLGALSMFF 284 Desulfitobacterium hafniense
WP_021421473 227 GKIVTIGCGDNLHDCEILKDEVNKRIKAR-RVLFTRGGVSICSHTGPDILAISC 279 [Clostridium] difficile
WP_011592288 226 E-PIILVELENEDIYLPIKEYL--ENNNI-EYLKLPLGCSVAIHSGPKVCALFY 275 Clostridium perfringens
WP_003641280 230 KPRIIIATSDAQEAAQTVREKILAKVPDA-EILLEHIGPTITSHTGLGCVAVFS 282 Lactobacillus plantarum
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