Conserved Protein Domain Family
M3B_PepF

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cd09609: M3B_PepF 
Peptidase family M3B, oligopeptidase F (PepF)
Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and is similar to oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid.
Statistics
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PSSM-Id: 341072
Aligned: 37 rows
Threshold Bit Score: 788.706
Created: 7-Sep-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteactive site
Feature 1: Zn binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:H H EClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on related peptidase family M3B oligopeptidase F proteins with structure
  • Comment:generally in GluZincins, the zinc ion is tetrahedrally co-ordinated by three amino acid (two histidines and a downstream glutamate) ligands and a water molecule

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
AGY40332    6 RSEFPENELWDLTALYQDQEDFlraiektr-eeinefvrNYKGKLHTFEDFEAAFAvl-eqIQIQLSHIGNYSFMPQTTD 83  Streptococcus sp. ...
CUB50764   11 RAEVPTELTWDLSDLYESDKEWetalrvlt--ddikkldAFKGQLHTSPTILLHCLlleeeLLMKLTKLYSYANLKESTD 88  Bacillus subtilis
KLU39621   11 RAEVPVEQTWRLEDLFPAPEDWekelqave--gdlvtvtQYKDRLGEGAGVLLDCLaawekLAVRLTRVYTYASLHLEAD 88  Peptococcaceae bac...
GAK01930    9 RQDVRTEETWDLTNLFASDKSWekayeele--milprlkPYQGTLHESAKQLLDCLktyenMMQMLIPVATYAMLKVAAD 86  Geomicrobium sp. J...
AMO22580    7 RAEVDPAQTWNLDDLFASREAWlaecegie--ralptitGYQGRLGEGAAQLLACLdardaLLARLQRASVYAGLRNAED 84  Ramlibacter tataou...
KYP80332    6 RSDVPLQEMWDLTDLFESHAAWeaeldair--aalpsvtKYHGQLAEGAEGLAACLeareaLQIRMNRVASYATFRLSTD 83  Acidibacillus ferr...
KPV41810    6 RSDVPEEQVWNLLDIFQDEAAFdaaivnlk--qvveglgAHESTLGTSDEGLFKFLqardeVLSQSARITSYAMLKFSED 83  Alicyclobacillus f...
EGS30928    3 RKDVPLDQTWDLTALYKDGQEAlkalddl----qglvkkLSSSKMEDSEEILPYTKdy-eqAMVLFDHLVNYEELIVSTD 77  Peptoniphilus sp. ...
ACV59186    6 RSEVPEHETWDLTPLFANVEAWeeavrrvr-qladeiavMASKSFGGPADVARALAlh-ddMLRLGTDVERYAMSKFAED 83  Alicyclobacillus a...
KQL52875    6 RKDVPEEETWDLTPIFASVDEWeqsflalekkiddlllgNDTLTLSSARNLLNSLKry-deLQEKLNRVSSYAMYKFSED 84  Bacillus shackletonii
Feature 1                                                                                     
AGY40332   84 FGDEAFAeiaqagm-dfetwasVELSFFDDALVEADEDVLERLGKLPhl----tSAIRQAKIKKAHYLgadvEKTLTNLG 158 Streptococcus sp. ...
CUB50764   89 RTNPVIQansskia-alwtkvhTALSFIHNEILSLEEGTIEKYLTEEtklepfrKSLLDILQKRPHTLspetEEALAALG 167 Bacillus subtilis
KLU39621   89 GTSPTYQewaqraa-aliakvqAALSFVESEIIALEEGRLEEYLAQNqglavyaRHLKDLVETKPYRLhpetEEALAALG 167 Peptococcaceae bac...
GAK01930   87 GSDANNQsrqgkvs-qlqaafsRASAFINSEIVKIDDETLHQFFKDNdelhtyeVQIQKIRKNKDYMLsdetEEVLAALN 165 Geomicrobium sp. J...
AMO22580   85 GRDPQRQaalaqan-slgarveAAIKFVDTEILALPGGTIDRYLQAEpglavhrTDLRDLEALKPHMLspetERVLAALG 163 Ramlibacter tataou...
KYP80332   84 SLEPNHQadaarva-tldtecsTKTAFIQSEVLALPDGTVESWIAGDatlhafrHTLRNWLEKRPYRLtaevESALLGLS 162 Acidibacillus ferr...
KPV41810   84 GSDPRHQalmgkaq-saahrvqATFTKLINTYLSLPEATLQSYAESTgplalykQYLSELVQMKAHKLapqaESALAAVS 162 Alicyclobacillus f...
EGS30928   78 FSDQAMAslgqkih-dglvavqEDLALVEGRYYKLEDGVLKDFSQDPvy----gAFFKGILRDKPHHLgqktEALLKSLS 152 Peptoniphilus sp. ...
ACV59186   84 ATDQGAQrlmsmaq-laldrvgEAAESLVAALCRVPEGDLAAWRADEalr-pyaPYFGEIDRERRHRLadeaEKVLAANS 161 Alicyclobacillus a...
KQL52875   85 ESDAENQammgrslslvakgrqVATNFSNDILSQLDIAKIDQWKKEEnglnefsRFLDRFDQVRDKVLspdiEMALATMS 164 Bacillus shackletonii
Feature 1                                                                                     
AGY40332  159 EVFYGPQDIYTKMRAGDfeMADFEv-DGKVYKNSFvTYENFYQNHENAEVREKAFRSFSEGLrkHQNTAAATYLAQVKSE 237 Streptococcus sp. ...
CUB50764  168 EVHSSPYKIYGMTKLADmdFNSIQdeQGNELPVSFaLFESKYEFSPSVDIRRKAYSSFVSTLkrYKNTMATTYATEVKKQ 247 Bacillus subtilis
KLU39621  168 EVLNAPSVIYNRSKSADmqFDPVVdkTGQELPNSFaLYEEKYESSPDTELRRNAFASFTRTLkqYKHTYAAVYGTEVKRQ 247 Peptococcaceae bac...
GAK01930  166 ESLRAPFSIYKQGKAADlsFADFQddKGNTHPLTFaLFEDKYEFSKDASIRRNAYKTFIDGLsnYQHTFAGTYAAEVTRQ 245 Geomicrobium sp. J...
AMO22580  164 EVLGAPAMIYNRAKASDmrFEPFTdpAGASQPNSFnLYEWTYEGSPEVGVRRAAWKTFCQGLkpYQHTFGATFATEVSKN 243 Ramlibacter tataou...
KYP80332  163 QTLSAPQRIYTLSKGAD--MRFDQa-LDKDGQAHP-VHDGGSQLSPDPILRRNAYASFTQGLraYRTTYAATFATEVEKN 238 Acidibacillus ferr...
KPV41810  163 EVLNAPSNLYRNATGADlrCGTVPdeEGNEFMVTPfSVMVRSETSHDGAFRRRAYDALNNGLkpYHNTLGVSLTTEIKKN 242 Alicyclobacillus f...
EGS30928  153 PVLDLPYSLYQEAKFKDltFPDFQv-DGKNYPLSFiLYEDQYAYDPDTQVRRKSFQAFSQALekYENTMATGFIAMVKRD 231 Peptoniphilus sp. ...
ACV59186  162 SAFSLPSGIYEAATGADmrFEPVRdsDGREVGVTPsALLMHIETSHDTVLRHRAYDSVVNGLrpYQHTLARSLGAKIQND 241 Alicyclobacillus a...
KQL52875  165 ETLRTPEVIYHAVTSSDmkFEPVKdrNGKEFSVSIhMYFTQIETSPDTVLRRNAYRSLSNGLktYQHTLAKSLISEVNKN 244 Bacillus shackletonii
Feature 1                                                                                     
AGY40332  238 KLISDMRGYDSVFDYLLAEQev---------dRSMFDRQIDLIMKDFAPVAQKFLKHVakvnGLEKMTFADWKLDLDSAL 308 Streptococcus sp. ...
CUB50764  248 VTLSRLRKFESVTHMLLEPQkv---------pLEMYNNQLDIIYKELAPHMRRFADLKkkvlGLDQMLFCDLHAPLDPEF 318 Bacillus subtilis
KLU39621  248 VTLARLRGYGSVTEMLLHPQhv---------tLEMYHNLHDIIQKELAPHMRRLARLKkrilGLDEMRFCDLKAPLDPEF 318 Peptococcaceae bac...
GAK01930  246 VNVSRLRGYPSVTDMLLHEQdv---------ePAMYHRQIDTIYNELSPYMQRYATLKknvlGLDELTFADLKAPLDPDY 316 Geomicrobium sp. J...
AMO22580  244 IVLARARHHASAERFLLHEHkv---------pFEFYTTVLDTIQAELSPHMRRYARLRkrvlGLDELLYCDLKATLDPGY 314 Ramlibacter tataou...
KYP80332  239 VTLAKMRGYDSATQMLLHPHkv---------eESVYHSIHDVIRTELAPHMRRYQRMR----QRLLGLDKMLYCDLTVQL 305 Acidibacillus ferr...
KPV41810  243 VALAKLRGYSSTAEMLLHQSdvsgfp-sdnipVSFFERVPGIILKELAPHMQRYARLRakvwGVQKIHFCDVKAPVVDTS 321 Alicyclobacillus f...
EGS30928  232 LALAKARSYPSVFDYMLRSHei---------sREMFDDHLDTMMEKLAPIMRTYAGILkdryGLNTMTYADLKLSPNPQA 302 Peptoniphilus sp. ...
ACV59186  242 VVAARLRGFSSVFEMLQSTRlggtma-anqvpPEHYFMVQDVMMNELAPHMRRLAQLRkramGLEKVRLCDTKAPFVRLT 320 Alicyclobacillus a...
KQL52875  245 ISLAKLRGYESAKDMLLQFSladnfysgdgvsSQFFGDILDTFRNELSPHMQRYAKLRkkqlGLDKLLFSDVKAPLDPEF 324 Bacillus shackletonii
Feature 1                                                                                   # 
AGY40332  309 n--PDVTIDDAYDLVMKSVAPLGEEYSREIARYQtERWVDFAANEGKdSGGYAADPYRVHPYVLMSWtgrmSDVYTLIHE 386 Streptococcus sp. ...
CUB50764  319 n--PAITYEEAGKLIQDSLQVLGDEYSAIIKKGFkERWVDLADNVGKsTGAFCSSPYGSHPYILITWqntmRGCFTLAHE 396 Bacillus subtilis
KLU39621  319 q--PPTTYEKASGVILDALSILGDEYIEIMRQALtDRWVDRADNVGKsTGAFCSSPYGVHPFILVTWtddmRSAFTLAHE 396 Peptococcaceae bac...
GAK01930  317 d--PDISFEEAFSLIKDSLKVMGEDYNKMIDRAYeERWVDRAENVGKqNGAFCASPYGAHPYILMTWtnmmRGTFILTHE 394 Geomicrobium sp. J...
AMO22580  315 t--PKISFEEAGALILEALAPMGEDYVATVRNAFeRRWIDRANNIGKsSGAFCASPYGVHPYILMTWagsmRDAFVLAHE 392 Ramlibacter tataou...
KYP80332  306 pdgPTVTYEQGRMWILDALQVLGEEYHEIIRRAFtERWIDRSDNLGKrSGAFCNTVYGVHSYVFMTWenhtRAVFTLAHE 385 Acidibacillus ferr...
KPV41810  322 s--EKIPFAEVQRIIPEAVSVMGEEYRALTERAFqDKWIYRGDNIGAlQGAYCNPVPGVHPYVFDPYhgilYDMFTLVHE 399 Alicyclobacillus f...
EGS30928  303 g--KKYSMEEAKDLILKAFAPYGKDYVDSIAKAFsDRWLDYADNDFKsTGGFCASPYQCHSYILMTFrgllSDVFTLAHE 380 Peptoniphilus sp. ...
ACV59186  321 d--TELTFDDARELILEAARPLGDTYGDILRRAFeERWIYWARNRGN-WNGAFCGESSVHPYVFSPFeggmYGVFVMAHE 397 Alicyclobacillus a...
KQL52875  325 d--PPISYKEAGEIITDAVGVLGPEYQNEMARVFsERWVYRGDNVGRrMIAFGGGVHGVHGYSFYPWggnlFDMLLLGHE 402 Bacillus shackletonii
Feature 1       #                         #                                                   
AGY40332  387 IGHSGQFIFsd--nNQSYFnahMSTYYVEAPSTFNELLLSDYLEQQFddprqKRFALAHRLTDTYFHNFITHLLEAAFQR 464 Streptococcus sp. ...
CUB50764  397 FGHAGHFYLan--kNQRIMnvrPSMYFVEAPSTMNELLLAQHLLATTdd-krMHRWVILQLLGTYYHNFVTHLLEGEYQR 473 Bacillus subtilis
KLU39621  397 LGHAGHFALag--kHQRYVnirPSLYFVEAPSTMNERILAHHLLARAed-prMRRWVILQSLETYYHNYVTHMLEAELQR 473 Peptococcaceae bac...
GAK01930  395 LGHAGHFYTah--qHQKLGsarPSTYMIEAPSTMNEMLLGDHLLKTAds-keMKRWVVLSLLGTYYHNFVTHLLEAHFQR 471 Geomicrobium sp. J...
AMO22580  393 LGHAGHFALag--rHQRYVntrPAMPFVEAPSIMNEVLLARQILARGgd-prMRRWVLMQVLGTYHHNFVTHLLEAELQR 469 Ramlibacter tataou...
KYP80332  386 LGHAGHLSLaa--kYQKQSnsrPPMSFIESPSTMNELLLAQHLLKQSdd-krMRRSVIAGLMGTYHHNFVNHLLEGELQR 462 Acidibacillus ferr...
KPV41810  400 LGHAAHGVFmsgqvQQNRM---SSRLFVEAPSTFNEHLLGRYLRQSGsp--eTRLRTACAQLFTFHHNFVTHLIEGELLR 474 Alicyclobacillus f...
EGS30928  381 LGHAGHFKRag--sKQSILtvePSLYFVESPSTTSELLLKEYLLKEAktpeeRREIIGQSLANTYYHNFVTHFLEAYFQR 458 Peptoniphilus sp. ...
ACV59186  398 LGHAVHLHLac--qNERPSnlsFSNLFIETPSTLMEHMVANALIRRAkd-daARAKVRMMQMFTFHHDFVTHQTEAEILR 474 Alicyclobacillus a...
KQL52875  403 LGHTLHYSLsm--kNQRFInntQSQLFVEAPSTLVEQLVVNYLKENRdd-prLKRWLNMYLMMSYHHNCVTHVLEAELLR 479 Bacillus shackletonii
Feature 1                                                                                     
AGY40332  465 KVYTlIEEGGtfgaskLNSIMKEVLTEFWGDAVEIDDDAALTWMRQSHYYM--GLYSYTYSAGLVISTAGYLHLkns-en 541 Streptococcus sp. ...
CUB50764  474 RVYSlAEEGEaltattLTEIKTNVLSTFWGNSVEIDEGAGLTWMRQPHYYM--GLYSYTYSAGLTASTAVAQMIkeegqp 551 Bacillus subtilis
KLU39621  474 RVYKlAEQGRpitanlLCDLKGSVLDEFWGGEVVIDEGATLTWMRQPHYYM--GLYPYTYSAGLTVSTVCAQRFeeegpa 551 Peptococcaceae bac...
GAK01930  472 EVYQaAEEGTiltadkLNELKLATLQGFWGDTVTFDKGAALTWMRQPHYYM--GLYPYTYSAGLTASTYASRRIieegap 549 Geomicrobium sp. J...
AMO22580  470 QVYRlAESGTpvtadlLNERKAAILARFWGDTLVIDEGAAMTWMRQPHYYF--GLYPYTYSVGLVAATCLAQKAeregaa 547 Ramlibacter tataou...
KYP80332  463 RMYQiAEKRTpiteqtLTRVKGEILAEFWGDTVEIDEGAALTWMRQPHYYM--GLYPYTYALGLSISTAAAQAIesqgep 540 Acidibacillus ferr...
KPV41810  475 RLYLlADAGEpvttsvLDKTQLEILQEFWGDSVEFDDGAELVWMRQAHYYS--GLYPYTYSVGLTASTALAVRMeqg-ed 551 Alicyclobacillus f...
EGS30928  459 EVYRrLEAGDqvqgqdLRKIFLETLEKFWGDSVDLPDSAGLTWMRQPHYYEasGFYSYTYSAGLNLGTLLGRLLvdd-ps 537 Peptoniphilus sp. ...
ACV59186  475 RLYTiADRGEplstdvFRRVSREVLADFWQDAVDLDEGADLYWMRQPHYYM--GLYPYTYAVGLAASTLLADRIlagdde 552 Alicyclobacillus a...
KQL52875  480 RLYDlAENKQplstfiISETKGSILSEFWGDTVEMDEGAKLTWMRQPHYYM--GLYPFTYSVGISASTIMAERIqkegqs 557 Bacillus shackletonii
Feature 1                                                     
AGY40332  542 GAKDWLDLLKSGGskTPLESAMIIGADIStdKPLRDTIQFLSDTVDQI 589 Streptococcus sp. I-G2
CUB50764  552 AVDRWLDVLRAGGtmKPLELMKHAGVDMSkpDAIRKAVSYVGSLIDEL 599 Bacillus subtilis
KLU39621  552 AVERWLEALRAGGtlRPLEITKLAGVDMEkpDPIKEAVAYVGSLIREL 599 Peptococcaceae bacterium 1109
GAK01930  550 AVERWLDMLRAGGskSPLELLSIAGVDLStaEPISEAVNYVGSLVQQL 597 Geomicrobium sp. JCM 19037
AMO22580  548 VMTGWLDVLRAGGtlQPLELMRKVGIDLAspLPLRDAVGYVGQLVAEL 595 Ramlibacter tataouinensis
KYP80332  541 AIKRWIDVLKAGGtkTPAELAGMAGADITnpDVIRSAVAYVGTLVDAF 588 Acidibacillus ferrooxidans
KPV41810  552 IAETWISALKAGGskHALELFRDAGIEMDsdAPYQEAVGYVGRLIDEL 599 Alicyclobacillus ferrooxydans
EGS30928  538 TTQKWLEVLDMGGsqSPIDLAQHVGLDIRtsQALEKTISIIGDMVQEL 585 Peptoniphilus sp. oral taxon 375 str. F0436
ACV59186  553 VLARWIEVLRVGGgkTPLELFAHVGLDMGdpSPYREAIRKVGEIVDEL 600 Alicyclobacillus acidocaldarius subsp. acidocaldar...
KQL52875  558 AGKQWTEVLKQGGnmNGFDLYKMAGIDMSttESLRKAIAKVGSIVDEL 605 Bacillus shackletonii

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