4O8W


Conserved Protein Domain Family
GerD

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pfam17898: GerD (this model, PSSM-Id:407751 is obsolete and has been replaced by 436127)
Spore germination GerD central core domain
This is the central core domain found in GerD from a thermophilic Bacillus. GerD plays a critical role in nutrient receptor-mediated spore germination in Bacillus species. The crystal structure of GerD reveals this domain as a trimeric superhelical rope fold. Alterations in GerD structure have profound effects on spores' nutrient germination.
Statistics
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PSSM-Id: 407751
Aligned: 105 rows
Threshold Bit Score: 97.5814
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4O8W_A          8 LVIDQKAVKETLQQMLTSDQGKKFWESALKDPKFAESFAKGLQAEHEKMMRALMKDPDYQALMIDILKDPEMEKAMVDVL 87 
EHQ62507       73 TMQQQEQIRTAVKDTLVSPEYEKVIEEVMKDPKFAGEFAKAVNKENKELHKALIKDPTYQQSFGEMLKSPDMTKAYLEMM 152 Paenibacillus ...
WP_036712658   79 TMQATDQIRTAVKDTITSPEYKKEFEKIMTDPQFAGDFAKAISTQNKQLHMQLIKDPTYQKAISDIMKSPEVMKMFLDLT 158 Paenibacillus ...
WP_038698959   79 MPQANEQIRMAVKDTITAPEYKKEIEKVMTDPQFAGDFAKAISSQSKQLHLQLIKDPTYQKSVSEIMKSPEMMKMFLDLT 158 Paenibacillus ...
WP_068650926   73 SSASSEEIRTAVKDTITAPEYDKKLEKIMTDPKFAGDFAKAISSQSKELHQQLIKDPTYQKSVTDIMKSPEVTKMFLDLT 152 Paenibacillus ...
KPC77637       64 VTIDSKELETILAKSFTDQQTKKEWEKILQKETVAANLYKATEEQQKTMLKTMMKDPEYQKMMLYLLKDPQFSQHLIQLL 143 Thermoactinomy...
WP_054968767   71 WLVSQTDVSTAMEKALTSGKNQSLLSQQLKDPKFAAALAKAIEPELLAQQKQLMKDPTYQKDMLVLLKSPDFSKQVEDLM 150 Alicyclobacill...
EPZ45937       71 LIASPQDVQQALTKAIESPQTQKFLTEGAKDPKFAAALAKAAQPELKTTVQQLMKEPDFQKDMLVLLKSNDFTSNLEALM 150 Alicyclobacill...
KEO81770       80 LAINEADVSVAMQKALTEPGGHFTLMEQMKNPKFATALAQTFKKDNEQILKELMKDPEYQEMMLTLLKSPEYTQTLYDLM 159 Tumebacillus f...
jgi:Btus_0188  70 LILSDADMQKALTTALTQGENKNLLQQQLQQPQFAKALADALKEQNRQLLKDLMKDPEYQQMMLDLMKSPDFQKQILSLM 149 Kyrpidia tusci...
4O8W_A         88 KSKEFRQHLQKVITETLNSPLYQAKIQDMLMKAA 121
EHQ62507      153 KTPDYRKQMMTLVKDAMGSPLFKLEVMDLLSKVV 186 Paenibacillus dendritiformis C454
WP_036712658  159 KTPEYRKQSMTVMQEAMQNPMFKMEVMSLLRNVV 192 Paenibacillus sp. P1XP2
WP_038698959  159 KTSDYRKQTATVMQETMQNPLFRMEVLSLLKTVV 192 Paenibacillus stellifer
WP_068650926  153 KSSDFRKQTMTIMTEAMQNPLFKMEVLGLLKSVV 186 Paenibacillus antarcticus
KPC77637      144 KSQQARQEVQKLMEELVSVPSIQEKLAKKVQEAL 177 Thermoactinomyces vulgaris
WP_054968767  151 QTPPFRGLIMKVMTEALQTPSFRMQFQDALKQAV 184 Alicyclobacillus ferrooxydans
EPZ45937      151 KGPDFRNTLQGLILQSMSSPAFQMQFQSAVQKAV 184 Alicyclobacillus acidoterrestris ATCC 49025
KEO81770      160 KTPQYRKQTMDIMTQSLQNPQFRLMYMDLMKQTI 193 Tumebacillus flagellatus
jgi:Btus_0188 150 SSPPYRQQTMKVMQEALQNPSFRLLFTDSLKQAV 183 Kyrpidia tusciae DSM 2912
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