Conserved Protein Domain Family
SpoIIID

?
pfam12116: SpoIIID 
Stage III sporulation protein D
This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.
Statistics
?
PSSM-Id: 403367
Aligned: 14 rows
Threshold Bit Score: 126.717
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
EDK33855       2 KNYnnIEDRVIEVSKYIMASRATIRTTAKVFGTSKSTIHRDMTKILPQLNPQIAEQVKNVLAYNKSIRHIRGGQALRIKK 81 
Q2RFY5         2 QDY--IRERVLQIAAYIVEYRCTVRQAATAFSVSKSTVHKDVAERLPKINMALAREVRAVLNTNKAERHLRGGEATRKKY 79  Moorella thermo...
BAF60981       2 QEY--IQKRVLDICAYILETQATVRQAAQVFQVSKSTVHKDMTERLPSLNKQLAQQVKAILEHNKAERHLRGGEATRRKY 79 
Q3A957         2 QEY--ILKRVLKLTYYVLENKATVRKTAEVFGVSKSTVHKDLTERLPALDKKLAGEIKKILEQNKAERHIRGGEATRKKY 79  Carboxydothermu...
Q8EM98         2 HDY--IKERTIRIGRHVVETRKTVRTIAKEFGVSKSTVHKDLTERLPEINPELAIQVKEILEYHKAIRHLRGGEATRQKY 79  Oceanobacillus ...
Q8RD76         2 KDY--IEERTLEISKYIVEHKATVREAAKVFGVSKSTVHKDVTERLPEINFELYKEVREVLSKNKAERHIRGGKATKMKY 79  Caldanaerobacte...
Q18CL4         2 RSH--IEERAIVVAKYILEKNTTVRQTAKTFGVSKSTIHKDVTERLKEINPSLAKEVKNVLDKNKSERHIRGGLATKLKY 79  Clostridioides ...
jgi:Cthe_2618  2 KSY--IEERAVELANYIVENKATVRAAAKKFGISKSTVHKDVTERLLQINSALAEQAKAVLDKNKAERHIRGGMATKAKY 79 
WP_021944681   2 RDY--IEERAEEIGQYIVESGATVRQTAKKFGVSKSTVHKDVTERLVKINPFLAARIRVVLDVNKAERHIRGGMATKEKY 79  Clostridium sp....
WP_004465551   2 kGI--VEERAIELGEYIIESKATVRKAAKKFGVSKSTVHKDVAERLKYVDPQLYKRVKTVLEINKAQRHIRGGLATKQKY 79  [Clostridium] i...
EDK33855      82 QKER 85 
Q2RFY5        80 KEAQ 83  Moorella thermoacetica ATCC 39073
BAF60981      80 KDLA 83 
Q3A957        80 KNMA 83  Carboxydothermus hydrogenoformans Z-2901
Q8EM98        80 KIDG 83  Oceanobacillus iheyensis
Q8RD76        80 QKln 83  Caldanaerobacter subterraneus subsp. tengcongensis
Q18CL4        80 EKEH 83  Clostridioides difficile 630
jgi:Cthe_2618 80 KGNV 83 
WP_021944681  80 LHEr 83  Clostridium sp. L2-50
WP_004465551  80 SAEr 83  [Clostridium] innocuum
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap