Conserved Protein Domain Family
CitB

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COG2197: CitB (this model, PSSM-Id:225107 is obsolete and has been replaced by 441799)
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription]
Statistics
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PSSM-Id: 225107
Aligned: 199 rows
Threshold Bit Score: 85.0481
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
17548506   1 MK-AVLLENHPLLRAGLAQVLAHPTLgLEVSAPEQ---PHAPLD----PADLLVVGVHD-ADVP-LDAARLRDLIA-QST 69  Ralstonia solanacearum
732115     7 KN-GIVISKIPVMQAGLKEVMRTHFPeYEIISSASa--EDLTLLq--lRRS--GLVIAD-LAGEsEDPRSVCEHYYs-LI 77  Escherichia coli
732115     7 KN-GIVISKIPVMQAGLKEVMRTHFPeYEIISSASa--EDLTLLq--lRRS--GLVIAD-LAGEsEDPRSVCEHYYs-LI 77  Escherichia coli
732115     7 KN-GIVISKIPVMQAGLKEVMRTHFPeYEIISSASa--EDLTLLq--lRRS--GLVIAD-LAGEsEDPRSVCEHYYs-LI 77  Escherichia coli
15834580   9 RN-VALIEKCVMSSIGIESLFRKFAGnPYKLHTYTs--QESFQDa--mSRISFAAVIFS-FSAMrSERREGLSCLTe-LA 81  Escherichia coli O1...
15596544   6 IEkLLDMTHHMSVHIPIELIISWEQS-EEAWSVKDnclNFVYVNrrytELITPRFGQKNsLLSPfSASIEEHDKLViQTG 84  Pseudomonas aerugin...
16767791   7 KN-GLIISKTPLIQEGLKGAITGNFPdYKLAYCRTi--EELTLLq--lRRS--NLVIAD-LAVNnASPRAICEYFYs-LL 77  Salmonella typhimur...
16767792   8 RN-VALVEKCVMSTIGIKGLFDAMPDcRHTLHIFSk--PSAFYKa--aLTTPFSAVIFS-LSALrTERRTGLSSLTe-LA 80  Salmonella typhimur...
15804940   9 RN-VALIEKCVMSSIGIESLFRKFAGnPYKLHTYTs--QESFQDa--mSRISFAAVIFS-FSAMrSERREGLSCLTe-LA 81  Escherichia coli O1...
16132187   9 RN-VALIEKCVMSSIGIESLFRKFAGnPYKLHTYTs--QESFQDa--mSRISFAAVIFS-FSAMrSERREGLSCLTe-LA 81  Escherichia coli K12
17548506  70 PR----HVVVLAAQVTAEEAHAVMACGADAYVAKT-QPTGV-LLATLQLVLAGGqaypALMPRAAQDVAAGPPAMNaaEA 143 Ralstonia solanacearum
732115    78 SQyreiHWVFMVSRSWYSQAVELLMC-PTATLLSD-VEP---IENLVKTVR-------SGNTHAERISAMLTSPAM--TE 143 Escherichia coli
732115    78 SQyreiHWVFMVSRSWYSQAVELLMC-PTATLLSD-VEP---IENLVKTVR-------SGNTHAERISAMLTSPAM--TE 143 Escherichia coli
732115    78 SQyreiHWVFMVSRSWYSQAVELLMC-PTATLLSD-VEP---IENLVKTVR-------SGNTHAERISAMLTSPAM--TE 143 Escherichia coli
15834580  82 IKfprtRRLVIADDDIEARLIGSLSPSPLDGVLSK-AST---LEIFHQELF-------LSLNGVRQATDRLNNQWYinq- 149 Escherichia coli O1...
15596544  85 KRi---EALALLRPDDHPAPCCLYFERMPLYDRRGnRTGVIaHAKTLTSVAPRG----FIATDGIGTFTFTPPSE----- 152 Pseudomonas aerugin...
16767791  78 SQyrdiHWVFLVPKSCYPHAVDLLMG-PVSTLLSD-EEP---IENLISVIH-------AGNARSERISKTLLSPQVp-SE 144 Salmonella typhimur...
16767792  81 INyphmRRLVIADDDAEARLISALSPLPLDGVISK-ASP---LDVLQDALF-------TSLNSARRTTERTDNLWElhq- 148 Salmonella typhimur...
15804940  82 IKfprtRRLVIADDDIEARLIGSLSPSPLDGVLSK-AST---LEIFHQELF-------LSLNGVRQATDRLNNQWYinq- 149 Escherichia coli O1...
16132187  82 IKfprtRRLVIADDDIEARLIGSLSPSPLDGVLSK-AST---LEIFHQELF-------LSLNGVRQATDRLNNQWYinq- 149 Escherichia coli K12
17548506 144 AQR------LNVSQRQYEVLVLLSRGHSVKGVGRLLGISEATVKTHACTLYRRLNVRN--------KSEAVYAAMRLGIP 209 Ralstonia solanacearum
732115   144 THDfsyrsvILTLSERKVL-RLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLAIHSnaemyawiNSAQGARELNLPSV 222 Escherichia coli
732115   144 THDfsyrsvILTLSERKVL-RLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLAIHSnaemyawiNSAQGARELNLPSV 222 Escherichia coli
732115   144 THDfsyrsvILTLSERKVL-RLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLAIHSnaemyawiNSAQGARELNLPSV 222 Escherichia coli
15834580 150 -------srTLSPTEREIL-RFMSRGYSMTQIAEQLKRNIKTIRAHKFNVMSKLGVSSdaglleaaDILLCMRHCETSNV 221 Escherichia coli O1...
15596544 153 ----------LFTSREWDVIYLLLSGLSEKEIAEQISRSLSTVKFHKSNIFQKVGCSCigafkalaRQKKWNFYIPPTFA 222 Pseudomonas aerugin...
16767791 145 IQQshdrpiVLTLSERKVL-RLLGKGWGINQIAALLKKSNKTISAQKNSAMRRLSIHSnaemyawiNSSQGARELNLPSV 223 Salmonella typhimur...
16767792 149 -------ncMLSPTEREIL-RFMSNGYSMPQIAVQLERNIKTIRAHKFNVMSKLGVSSdaglldaaDILLYLRAGDATAL 220 Salmonella typhimur...
15804940 150 -------srTLSPTEREIL-RFMSRGYSMTQIAEQLKRNIKTIRAHKFNVMSKLGVSSdaglleaaDILLCMRHCETSNV 221 Escherichia coli O1...
16132187 150 -------srTLSPTEREIL-RFMSRGYSMTQIAEQLKRNIKTIRAHKFNVMSKLGVSSdaglleaaDILLCMRHCETSNV 221 Escherichia coli K12
17548506 210 LE 211 Ralstonia solanacearum
732115   223 YG 224 Escherichia coli
732115   223 YG 224 Escherichia coli
732115   223 YG 224 Escherichia coli
15834580 222 LH 223 Escherichia coli O157:H7
15596544 223 SA 224 Pseudomonas aeruginosa PA01
16767791 224 YG 225 Salmonella typhimurium LT2
16767792 221 QH 222 Salmonella typhimurium LT2
15804940 222 LH 223 Escherichia coli O157:H7 EDL933
16132187 222 LH 223 Escherichia coli K12
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