Conserved Protein Domain Family
gltD_gamma_fam

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TIGR01318: gltD_gamma_fam 
glutamate synthase small subunit family protein, proteobacterial
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Statistics
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PSSM-Id: 273553
Aligned: 5 rows
Threshold Bit Score: 872.973
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAA79783       4 FSFIEDPRQDPKKLDVEERRE-AFREIYQSFDLGSAQLQADRCLHCGN-PYCEWKCPVHNYIPNWLQLIVENRLEEAATL 81  Acidithiobacill...
WP_000081674   6 YQFIDLQRVDPPKKPLKIRKI-EFVEIYEPFSEGQAKAQADRCLSCGN-PYCEWKCPVHNYIPNWLKLANEGRIFEAAEL 83  Enterobacteriaceae
WP_021501396 186 QMQATPARGEPDKLAIEARKT-GFDEIYLPFRADQAQREASRCLKCGEhSVCEWTCPLHNHIPQWIELVKAGNIDAAVEL 264 Escherichia coli
EIE38405     174 ALLPVNSRKGADKISASERKT-HFGEIYCGLDPQQATYESDRCVYCAEkANCNWHCPLHNAIPDYIRLVQEGKIIEAAEL 252 Escherichia col...
WP_010895123   7 FQFLDLPRQMPQRIPVELRTSgDWRELYGKFDKAEAQYQAGRCLDCGN-PYCSWKCPVHNAIPQWLQLVQENRIDEAAAL 85  Xylella fastidiosa
AAA79783      82 SHQTNTLPEICGRICPQDRLCEGACTLNATGGAVTIGNLERFVTEEALARAWQPDMPDILPNGKRVAVVGGGPAGLGCAD 161 Acidithiobacill...
WP_000081674  84 SHQTNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACAD 163 Enterobacteriaceae
WP_021501396 265 SHLTNTLPEITGRVCPQDRLCEGACTIRDEHGAVTIGNIERYISDQALAKGWRPDLSHVTKVDKRVAIIGAGPAGLACAD 344 Escherichia coli
EIE38405     253 CHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCAD 332 Escherichia col...
WP_010895123  86 CHATNPLPEVCGRVCPQDRLCEGSCTLEEFG-AVTIGAVEKYIVDTALQQGWRPDLSHVQPTGWRVAVVGAGPAGLACAD 164 Xylella fastidiosa
AAA79783     162 ILNRAGTEVVVFDRYPAVGGLLTFGIPSFKLEKAVVARRANLLQEMGIRFQLDTEVGRDISLGKLLEDFDAVFLGMGTYT 241 Acidithiobacill...
WP_000081674 164 VLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQ 243 Enterobacteriaceae
WP_021501396 345 VLIRNGVAVTVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMGIHFELNCEVGKDVSLDSLLEQYDAVFVGVGTYR 424 Escherichia coli
EIE38405     333 ILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYG 412 Escherichia col...
WP_010895123 165 RLARAGVQAVVYDRYEQIGGLLQFGIPSFKLDKAVMSTRRKVLEGMGVEFRLGVEIGKDLGIEALLEHYDAVFLGVGAYR 244 Xylella fastidiosa
AAA79783     242 AKTGDFPGEKLPGVLKALSYLIANTRHLMQLP---------DPTLPYISLSGKRVVVLGGGDTAMDCLRTAIRQGARQVT 312 Acidithiobacill...
WP_000081674 244 SMRGGLENEDADGVYAALPFLIANTKQLMGFGe--------TRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVT 315 Enterobacteriaceae
WP_021501396 425 SMKAGLPNEDAPGVYDALPFLIANTKQVMGLEe--------LPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVT 496 Escherichia coli
EIE38405     413 MMRADLPHEDAPGVIQALPFLTAHTRQLMGLPe--------SEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVT 484 Escherichia col...
WP_010895123 245 YTDGGLPGQDLKNVLPALPFLVQNGRIVSGNDpygrpiagwEDQVQLPDVTGKSVVVLGGGDTGMDCVRSAIRLGATKVT 324 Xylella fastidiosa
AAA79783     313 CVYRRDEENMPGSRREVANAREEGVHFLFHRQPVEVVGDAASGSPGRASGGDPSGEPDARGRRHPEIIPGSEQVLDADVV 392 Acidithiobacill...
WP_000081674 316 CAYRRDEENMPGSRREVKNAREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAV 395 Enterobacteriaceae
WP_021501396 497 CAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEGSEFVMPADAV 576 Escherichia coli
EIE38405     485 CAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVL 564 Escherichia col...
WP_010895123 325 CIYRRDEANMPGSAREVANAREEGVRFLFNRQPLSIQSGTDKQAIGVTVVETKLAEPDANGRRNAVPIQGTEAVLEADVV 404 Xylella fastidiosa
AAA79783     393 IIAFGFDPSPAPWFAEHHITTDSRGRISTN-------AQFQTSNPRIFAGGDMRRGSDLVVTAVDEGRRAAQGILDYLGV 465 Acidithiobacill...
WP_000081674 396 IMAFGFRPHNMEWLAKHSVELDSQGRIIAPeg---sdNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWLEV 472 Enterobacteriaceae
WP_021501396 577 IMAFGFNPHGMPWLESHGVTVDKWGRIIADve---sqYRYQTTNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 Escherichia coli
EIE38405     565 IMAFGFQAHAMPWLQGSGIKLDKWGLIQTGdv---gyLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDT 641 Escherichia col...
WP_010895123 405 IIAFGFSPMLPEWLTAQGIQASSNGRIVVAlsdtgdgLTYQTTHPKLFAGGDCVRGADLVVTAVAEGRDAAESIVRWLRA 484 Xylella fastidiosa
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