Conserved Protein Domain Family
PHA03261

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PHA03261: PHA03261 
Capsid triplex subunit 1; Provisional
Statistics
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PSSM-Id: 223026
Aligned: 20 rows
Threshold Bit Score: 452.203
Created: 9-Dec-2010
Updated: 16-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
38638228   11 LFR--LRERADEGAARRENDRLLGLGSTVPQLLRPVWSGAP----TVtgn--iigAIVNRGSAGTELLRTGPATNSGGGR 82 
125745090   1 MKP--LLRSHETQYYSLYPDTLNGLHNVFRTIGNSVQSDTV----RRlnlgyldgDNRRGNLAGGLELLRDATTPNASRM 74 
10834909    1 MKT--TFRTSDVQASNTQSNASDRLHDILRSINNSMHSGIV----RRinigyphaGNRRGTLTAGLELLSNTITTTPPGA 74 
12084867   10 TKT--ASRTSEMKYYSAHSNRPYELHSLMRSIGKNIRTSVG----GRinlgymnvGDRSSVNDLNVLWTADTLGMYKMDR 83 
9629419     9 TPSvwGGSTVELPPTTRDTAGQGLLRRVLRPPISRRDGPGLp-------------RGSGPRRAASTLWLLGLDGTDAPPG 75 
9629308     9 apmawaesaVETTTSPRELAGHAPLRRVLRPPIARRDGPVL----LG---------DRAPRRTASTMWLLGIDPAESSPG 75 
30984466    1 MKA--KPPIPGVQAALPETAGSPPLHRLLRPTGARRDGPIS----ST---------LATPRQTATTLWLLGLDPLGARPA 65 
56694761    1 --mkakpsaQGAPPALSGAAGSPALHHVLRPTGARRDGPIP----SS--------ALATPRQTATTLWLLGLDAPKARPG 66 
83722607    1 MKA--KPTAPGAPAAFSDAAGSPPLHHILRPAGARRDGPVS----SA---------LATPRQTATTLWLLGLDAPKARPG 65 
255683175   1 ---------MKVPNGNGEFSGHRSVYSVTSNDPLRKIATGItidgRRngmrsnanWRSNPGMKSGLEWMLNTLKESTTDT 71 
38638228   83 MAAQQHAFGADDAAGVKAALLGS---IAPTADALRAQQVLTTQVTVTDMCKPDVEGPGSLMLFFRGVRRlLIKLSAETMV 159
125745090  75 NITRPLDTSTSGATAMIMQSLRTdvaENITLLTGDSRATISRQVTLTDFCFPDAEMPGLIILSIRHPLD-INSEALYATP 153
10834909   75 NIHRSIANSAGERTATIIQSLRTy-sGSGDLNTNGDNNVLSRQISLTDFCFPDAEMPGLIVLSMRHPLD-INSEHLYSTP 152
12084867   84 TPAFKDSTAKTTAIIAQSIRS-----NSEIREWGGDRAVITRQVTLTDFCFPDAEFPGSILLSMRHPLD-INSEALYATP 157
9629419    76 ALTPNDDTEQALDKILRGTM------RGGAALIGSPRHHLTRQVILTDLCQPNADRAGTLLLALRHPAD-LPHLAHQRAP 148
9629308    76 TRATRDDTEQAVDKILRGARR-----AGGLTVPGAPRYHLTRQVTLTDLCQPNAEPAGALLLALRHPTD-LPHLARHRAP 149
30984466   66 PGDASDGGSERAVRALLQGIVRA---GRPAAAPSPFRHHLTRQITLTDLCQPDADRAGTVILALRHPSD-FPALARQHAP 141
56694761   67 AGAAADGGAEHAARVLVQGVVRA---GRIAAAPSPLRHHLTRQITLTDLCQPDADRAGAVVLALRHPGD-FPALARQHAP 142
83722607   66 AGGAADGGSEHAARTLVRGVVL----AGRSAAPSPLRHHLTRQITLTDLCQPDADRAGALVLALRHPAD-FPALARQHAP 140
255683175  72 AFLQPAAGPDSVTATIMHALVQ----YDPLLDTRRSLTFLARQVSLTDFCVPESERPGMPILILRHPLD-IHSMSILSTP 146
38638228  160 RNDLINELETAFMILNRICGLPPVGTNGiNNFEASLVSLNVLAAAAAPHYRNTCEVDALRTFVLAGGKDSKLNEKLTNLD 239
125745090 154 AGRDPRVMETVWYELSELAAVSVNRVNG-SGVRPSLVSLSFLIAARASDYADKCGAEALRAHVISNYGRRRMEEKLDRFG 232
10834909  153 AGRDPRALESAWYELSELAAVSVNRLDG-SGVRPSLLSLSFLIASRAGDYADKCGAEAVRAHVISNYGRRRIEDRLDRFG 231
12084867  158 GGRDPRALETAWYDLSELAAVSVNRRDG-GGVRPSLVSLFFLVASRAGDYSDKNGAEAVRAHVISNYGRRRMEERLDRFG 236
9629419   149 PGRQTERLGEAWGQLMEATALGSGRAES-GCTRAGLVSFNFLVAACAASYDARDAADAVRAHVTANYRGTRVGARLDRFS 227
9629308   150 PGRQTERLAEAWGQLLEASALGSGRAES-GCARAGLVSFNFLVAACAAAYDARDAAEAVRAHITTNYGGTRAGARLDRFS 228
30984466  142 PGRRVEWLGEAWGRVLEASTMGSCRAES-GCTRAGLVSLNFLVAACAPAYDAREAAEAVRTHVTANYRGARAGARLDALA 220
56694761  143 PGRRVEWLGEAWGRVLEASTTGSCRAES-GCTRAGLVSLNFLVAACAPAYDAREAAEAVRTHVTANYRGARAGARLDALA 221
83722607  141 PGRRVEWLGEAWGRVLEASTTGSCRAES-GCTRAGLVSLNFLVAACAPAYDAREAAEAVRTHVTANYRGARAGARLDALA 219
255683175 147 PGRNPTVLEEAWLRLSETASVSVQRSGE-NGVRASLISFSFLVASRAEEYPDRSGAEALRAHIIATYGSRRVSQRLDRFG 225
38638228  240 LILQASVESRNFPHSILFPAGALTESVNSTNVACVKMLMNGSVE--LEGGLTRPCGSFRFPACLFLDLDdtRQCgvvprg 317
125745090 233 ICLITMLRCRVFPHRHFQLLGGLISWISQREIASITAVVRGPQEsiKTEQTAMPRSSVYVPACAYIDFD--KDIr----v 306
10834909  232 SCQAAMLRCHVFPHRHMQVLGGMVSWIAQREIASITAVVKGSQEsaRTEQTNNPRSSVYVPACAYLDLD--KEIh----m 305
12084867  237 ICQMAMLRSHVFPHRFFQLLGGMISWVSQREIASITAVMRGSQEsiKTEQTTLPRSSVYVPACAYIDLD--SSIr----v 310
9629419   228 ECLRAMVHTHVFPHEVMRFFGGLVSWVTQDELASVTAVCAGPQEaaHTGHPGRPRSAVILPACAFVDLD--AEL------ 299
9629308   229 ECLRAMVHTHVFPHEVMRFFGGLVSWVTQDELASVTAVCSGPQEatHTGHPGRPRSAVTIPACAFVDLD--AEL------ 300
30984466  221 ECLRAMVHTHVFPHETLRFFGSLASWVTQDELASVTAVCSGPHEaaHTGSPGRPRSAITVPACAFIDLD--AEL------ 292
56694761  222 ECLRAMVHTHVFPHEALRFFGSLASWVTQDELASVTAVCGGPHEaaHTGNPGRPRSAITVPACAFIDLD--AEL------ 293
83722607  220 ECLRAMVHTHVFPHEALRFFGSLASWVTQDELASVTAVCGGPHEaaHTGDPGRPRSTITVPACAFIDLD--AEL------ 291
255683175 226 EALTAMVRCHVHPHMVFNLLGGLLSYISQREIASVTAVSSGIQEsyKTDKSSNPRSSVHIPACAFLDLD--QEL------ 297
38638228  318 ADRADGLFYVYLLFLYSTETWHPSYEIYVAKSALGEAGLQSMLDEKFARRRVNNTVAAAPPAGNFyARGRQREDGDWRCY 397
125745090 307 IHEERSSSSLYLVFVYTQKFGRETVRIYVMRSRLGEWAFREGLGYMYSGVRSNNAITGVDGLIVPhGANVNMEFPLTKTL 386
10834909  306 LHDDRASSLLYLVFVYAQHLGRESIRVYLMRSRLGESVFREGLGYLYSGLRAGNAINGLAGIIAPhGVDANTEFPLSKAF 385
12084867  311 IYEDKSASLIYLVFVYTQRLGRESIRVYVMRSRLGEGTVQECLGYLYSELRANNTIHGTDGTLTPrGANVNTEFPLNSSF 390
9629419   300 GLGGPGAAFLYLVFTYRQRRDQELCCVYVIKSQLPPRGLEPALERLFGRLRITNTIHGTEDMTPP-APNRNPDFPLAGLA 378
9629308   301 CLGGPWGAFLYLVFTYRQCRDQELCCVYVVKSQLPPRGLEAALERLFGRLRITNTIHGAEDMTPP-PPNRNVDFPLAVPA 379
30984466  293 CFGRPGAAFLYLAFTYRQRRDQELCCVYVIKSQLPPRGLESALERVFGRLRTTNTIHGIEDMAAP-PPERNADFPLAALA 371
56694761  294 CFGRPGAAFLYLAFTYRQRRDQEQCCVYVIKSQLPPRGLESALERVFGRLRTTNTIHGVEDMAPP-PPNRNADFPLAALA 372
83722607  292 CFGRPGAAFLYLAFTYRQRRDQEQCCVYVIKSQLPPRGLESALERVFGRLRTTNTIHGIEDVAPP-PPDRNADFPLAALA 370
255683175 298 RISGDGVCFLYLVFVYTHRLGREGVRAYFIKSTLNDICIREGLGHVYGRLRTENTIRGMQGAVCA-PATDNAIFPLLQLY 376
38638228  398 IEDAYRRASGNNAVNPLEQgARptDLHISFAGVPDRNSATYAAFCQLGVSlGPWSSACRYTTVQrHGLGLKYVELPGLSL 477
125745090 387 DLRNRDRRLGIAARSRDLN-KA--DWKVDLRGRPTKESCMYAAYCRLGHL-DESSVPVKKFERC-GSLDIPVIWIPGVIW 461
10834909  386 EVHKHA-CRNTGIGPRD---SEkvDWRLDLRGRPTKNSCMYAAYCRVGHL-NEYSMPAKKSERCgGSVEVPVVWVPGVVW 460
12084867  391 ETQSQPAKFTRKVEKAE--------WKVDLRGRPTQESCMYAAYCRMGYL-DGSCTPLKKSERY-GSVDVPIVWLPGMHW 460
9629419   379 ANPQTPRCSAGQVTNPQFA-DRlyRWQPDLRGRPTARTCTYAAFAELGMMpEDSPRCLHRTERF-GAVSVPVVILEGVVW 456
9629308   380 ASSQSPRCSASQVTNPQFV-DRlyRWQPDLRGRPTARTCTYAAFAELGVMpDDSPRCLHRTERF-GAVGVPVVILEGVVW 457
30984466  372 ADPRAPRCSPGQVEAPQYA-ARlyRWRPDLRGRPTGRTCAYAAFAELGIMpDDTPRCMRHTERF-GSVSVPVVLLEGVVW 449
56694761  373 ADPRSPRCSPGQVEAPHRA-ARlyRWRPDLRGRPTARTCAYAAFAELGVMpEDTPRCMRHTERF-GSVSVPVVLLEGVVW 450
83722607  371 ADPRSPRCSPGQVEAPHYA-ARlyRWRPDLRGRPTARTCAYAAFAELGIMpDDTPRCMRHTERF-GSVSVPVVLLEGVVW 448
255683175 377 SNINAPRCPRATLFAPRAT-DGlfNWVPDIRGYPTIDSCMYAAYRRVGIMtGDSPRAVKRTERY-GSIDVPVIWLEGVNW 454
38638228  478 KIGT-WRACY 486
125745090 462 NIGT-WIECY 470
10834909  461 DIGE-WTECY 469
12084867  461 DVGD-WTECY 469
9629419   457 RPGE-WRACA 465
9629308   458 RAAG-WRACA 466
30984466  450 RPGE-WRVCS 458
56694761  451 RPGE-WRVCA 459
83722607  449 RPGE-WRVCS 457
255683175 455 TLGSpWRECY 464
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