Conserved Protein Domain Family
NifU_proper

?
TIGR02000: NifU_proper 
Fe-S cluster assembly protein NifU
Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]
Statistics
?
PSSM-Id: 273921
Aligned: 4 rows
Threshold Bit Score: 485.915
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q43909   1 MWNYTDKVKEHFFNPKNAGALDEADD------VGEVGSITCGDALKLMMKVNPDQPGHRDANFQTFGCGSAIASLrSALT 74  Azospirillum brasilense
P05343   1 MWNYSEKVKDHFFNPRNARVVDNANA------VGDVGSLSCGDALRLMLRVDPQSEIIEEAGFQTFGCGSAIASS-SALT 73  Klebsiella pneumoniae
P05340   1 MWDYSEKVKEHFYNPKNAGAVEGANA------IGDVGSLSCGDALRLTLKVDPETDVILDAGFQTFGCGSAIASS-SALT 73  Azotobacter vinelandii
Q43885   1 MWDYTDKVLELFYDPKNQGVIEDNGEpgvkvaTGEVGSIACGDALRLHIKVEVESDKIVDSRFQTFGCTSAIASS-SALT 79  Trichormus azollae
Q43909  75 EMIIGKTVDEALgQVTNRDIAEYLGGLPPEKMDCSVMGAEALPAAIANFKGEGLVDDHE--EGELVCKCFGIDAAMIERA 152 Azospirillum brasilense
P05343  74 ELIIGHTLAEAG-QITNQQIADYLDGLPPEKMHCSVMGQEALRAAIANFRGESLEEEHD--EGKLICKCFGVDEGHIRRA 150 Klebsiella pneumoniae
P05340  74 EMVKGLTLDEAL-KISNQDIADYLDGLPPEKMHCSVMGREALQAAVANYRGETIEDDHE--EGALICKCFAVDEVMVRDT 150 Azotobacter vinelandii
Q43885  80 EMIKGLTLDEAL-KVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNYRGIPLATHDDedEGALVCTCFGVSENKVRRI 158 Trichormus azollae
Q43909 153 VTVNSLTTLEEVTHYTKAGGSCQTCHEKIEEVLEAVLAKTGAVGPAQAPspTppaRSgwtpssrwprr-prhapakltnv 231 Azospirillum brasilense
P05343 151 VQNNGLTTLAEVINYTKAGGGCTSCHEKIELALAEILAQQPQTTPAVAS--G---KD----------------------- 202 Klebsiella pneumoniae
P05340 151 IRANKLSTVEDVTNYTKAGGGCSACHEAIERVLTEELAARGEVFVAAPIkaKkkvKVlapepapapvaeapaaapklsnl 230 Azotobacter vinelandii
Q43885 159 VIENDLTSAEQVTNYIKAGGGCGSCLAKIDDIIKDVKENKAATNLNNKGgsKptnIPnsgqkr------------pltnv 226 Trichormus azollae
Q43909 232 QRMQKIMFAI-EDWRPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAGTMMG-VQAKLVEALGEFVRVKPA 303 Azospirillum brasilense
P05343 203 PHWQSVVDTI-AELRPHIQADGGDMALLSVTNHQVTVSLSGSCSGCMMTDMTLAW-LQQKLMERTGCYMEVVAA 274 Klebsiella pneumoniae
P05340 231 QRIRRIETVL-AAIRPTLQRDKGDVELIDVDGKNVYVKLTGACTGCQMASMTLGG-IQQRLIEELGEFVKVIPV 302 Azotobacter vinelandii
Q43885 227 QKIALIQKVLdEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIaIESRLRDRINPSLVVEAV 300 Trichormus azollae
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap