2XQ2


Conserved Protein Domain Family
SLC5sbd

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cd10322: SLC5sbd 
Click on image for an interactive view with Cn3D
Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain
This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.
Statistics
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PSSM-Id: 271357
Aligned: 245 rows
Threshold Bit Score: 159.643
Created: 7-Nov-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Na binding site
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:Na binding site [ion binding site]
Evidence:
  • Comment:based on the structures of Vibrio parahaemolyticus vSGLT (SLC5), Aquifex aeolicus LeuT (SLC6), and the NCS1, Microbacterium liquefaciens Mhp1, bound with Na+, functional studies of Escherichia coli PutP (SLC5) and mammalian NIS (SLC5), and mutational analysis of vSGLT
  • Comment:one of two Na+ binding sites in Aquifex aeolicus LeuT, where it is referred to as the Na binding site 2

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                         #  #                         
2XQ2_A      14 MVFAIYVAIIIGVglwvs-rdkkgTQKSTEDYFLAGKs--LPWWAVGASLIAANISAEQFIGMSGSGYSIgla---iasY 87   Vibrio parahaemo...
EDZ61549    10 DGIWFLVAYLASLiligfagkfasKEESLKDFYLGGKg--FGVGVLFLTMYATQYSGNSLIGFAGSAYRNgwf----flV 83   Campylobacterale...
AAR37512    10 GGLIFMSVYLFSLigiglagrlarKENTLADFYLAGRg--MGVFVLFLTLYATQYSGNTMIGFAGKAYRGgyq----slV 83   uncultured marin...
NP_952480    7 LVVGISLLYIVFLft-------vaYYADKKKEEGRSV---IANPLVYALSIAVYHTSWTFYGSVGKAATTgid----flL 72   Geobacter sulfur...
NP_718326    6 VVAVIAICYVSLLf---------lLAWGAERWFSGVTk--KLQVVIYGLSLAVYCSSWSFLGTVGQSAKDf--------W 66   Shewanella oneid...
YP_205762    6 IVVPVSLAYLGLLfli------awYGDRQKGWLAQYR---PWIYSLSIAVYCTSWTFYGTVGQATNNPWSfl------pI 70   Vibrio fischeri ...
NP_229958    5 LVIPVSLAYLGVLfl-------iaWYGDRQTRWLANWr--PWIYSLSIAVYCTSWTFYGTVGQASVNPWSfl------pI 69   Vibrio cholerae ...
YP_353243    5 LLVLSCLCYVILLf---------lVAFLVERRAVGEAlpwLRSPLVYTLSLSIYCTAWTFYGAVGYAARSgle----ylT 71   Rhodobacter spha...
NP_772529   12 FVLAVAAGYVTTLflva----wwgDRRSAGGPLVSPNs--WAAAISYCLTLAVYNTSWSFYGSVGRAATSgld---fatI 82   Bradyrhizobium d...
NP_253413    9 QLILISVTYLSTLf---------gIAWITERGYVPRRl--VRHPLVYTLSLGVYASAWAFYGTVGLAYQYgygflaiylG 77   Pseudomonas aeru...
Feature 1                                                                                      
2XQ2_A      88 EWMSAITLIIVGKYFLPIFIEKGIytipefv---------ekrfnkKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL 158  Vibrio parahaemo...
EDZ61549    84 GVTFMIAIVAGYLIYAPKLFPISKkhgfitvgd-----yinfrynsQTLTYLIVGISIFALSNYMLTNLKAIGYIIEYVT 158  Campylobacterale...
AAR37512    84 MVIFMSSVIGGYLIYAPKLFRLAQkhgfittgd-----fiqhrfknNALTIIIVILSIIALGNYILTNLKAIGYIVVAAT 158  uncultured marin...
NP_952480   73 VYLGPTLVAFSWWFFLRKIVRICKennitsiad----fissrygksQWLGAVVTVIAIVGIMPYIALQLKAVSTTFDIIC 148  Geobacter sulfur...
NP_718326   67 SFIPIFVGPILIFTLGFGMLRKMVlvskaqnitsvadfiaarygksQTLAAIVTLIAMFGIMPYIALQLKAMVFSLNLFQ 146  Shewanella oneid...
YP_205762   71 YLAPIFVFVFAWRFLARIILIAKRehitsiadf-----iaarygksQGLAGVITIIAVIGILPYIALQLRGITMGLDLVA 145  Vibrio fischeri ...
NP_229958   70 YIAPILMFVFGWRVLARLILIAKRehitsladf-----iaarygksQGLAVAVTVIAVLGILPYIALQLRGITMGLNIVA 144  Vibrio cholerae ...
YP_353243   72 IYLGPTLVFVGWWWVLRKLVRIGRqqrvtsiad----lissrygksNLLGVLVTLLCVVAATPYIALQLQSVTLSFSVFA 147  Rhodobacter spha...
NP_772529   83 YIGPTLVLLFGQTLLSKVIAIAKAqnvtsvsdf-----iaarygksQVLAAFVTLASLLGVLPYIALQLKAVGKSFDYLI 157  Bradyrhizobium d...
NP_253413   78 ISGAFLLAPVLLYPILRVTRAYQLssladlf---------afrfrsTWAGALTTLFMLIGVLPMLALQIQAVTDSISILT 148  Pseudomonas aeru...
Feature 1                                                                                      
2XQ2_A     159 GIp-------------LMYSILGLALFALVYSIYGGLSa---------VVWTDVIQVFFLVLGGFMTTYMAVSFiggtdg 216  Vibrio parahaemo...
EDZ61549   159 GGgi-----------gFTEGIIFMAIIMVIYETLGGMRs---------VAWTDAIQGVLLFVGVIIIFSVIMIN------ 212  Campylobacterale...
AAR37512   159 GGvv-----------gFAQGIIILSLIMVIYETLGGMRs---------VAWTDVIQGVLLLIGVVLIFIVIQVE------ 212  uncultured marin...
NP_952480  149 GYpyvqlpllhtnypvSLHTNFFAAVILSAFSVIFGARklvsterhegLVAAIAVESIVKLVAFMAVGIYVTYGmf---- 224  Geobacter sulfur...
NP_718326  147 PAddp--------lngVTIALLITALLAIFAILFGTRKldate-hnpgMMLAIAFESLVKLAAFLLVGIVISFGvf---- 213  Shewanella oneid...
YP_205762  146 PNlaqdf-----gyqdGHISWFVGAALAIFTILFGTRHidtte-hhrgLMMAVAFESIVKLVAFLMVGVFILYLays--- 216  Vibrio fischeri ...
NP_229958  145 PDlmtvyg--yqeshvSWFVVLALALFTMLFGTRHIDNteh----hrgMMMAIAFESIVKLVAFLCVGVFIAYLawrt-- 216  Vibrio cholerae ...
YP_353243  148 SGshegw----qmpdrDSTAIWVAGGLALFTILFGTRKldane-qhtgIVTAIAVEGIVKLVALVAVGSYVVWGva---- 218  Rhodobacter spha...
NP_772529  158 LQperagg---ealrfWQDSAFGVAASMALFAIVFGVRhvhasehhrgLMLAIAFESVVKLIAFLIVALFVLFGlsg--- 231  Bradyrhizobium d...
NP_253413  149 RDp------------aQERVAFVFCTLITLFAILFGARhiatrerhegLVFAIAFESLVKLVMLGSIGLYALYGvfgg-- 214  Pseudomonas aeru...
Feature 1                                                                                      
2XQ2_A     217 wfagVSKMVDAAPghfemildqsn--pqymnlpgiaVLIGGLWVANLYYWGFNQYIIQRTLaaks----vseaQKGIVFA 290  Vibrio parahaemo...
EDZ61549   213 ----YGSIDANTAlflqnqpdl-----fadvttanqITWISVLILIFFGISVYPQAIQRIYsakn----estlRRSLSLM 279  Campylobacterale...
AAR37512   213 ----YGGLAASAEiikneksdl-----lkfpnwferRLWISTIGLAFFGISVYPHAIQRIYaakd----entlKRSMQIM 279  uncultured marin...
NP_952480  225 --ngFGDIFARIDaqghlldnlttiggssttsharwFTTLYLSMGAIMLLPRQFHVMVIENsde------ehiKKAMWLF 296  Geobacter sulfur...
NP_718326  214 --dgFGDIWQQASdkslih-----------hpnpriETLMPELLVGMAAFLCMPRQFHVMVvecad---esvlSKGRWLF 277  Shewanella oneid...
YP_205762  217 --epKVDLFSIAKetyq---------------spnvITLLFHTILTMAAIVCLPRQFHTTVveneq---aqdlRTARWVF 276  Vibrio fischeri ...
NP_229958  217 dgleLSTIAASTYqap------------------nwPTLLIHTLLTMIAIVCLPRQFHTMVvenerpqdlhtaRWLFPVY 278  Vibrio cholerae ...
YP_353243  219 --dgPADVIARIDrsaiad------------welapSRWAGLTFLSAAAVVCLPRMFQVLVvengd---erhlATASWAF 281  Rhodobacter spha...
NP_772529  232 --gpGALLTQFQSdpqltgi---------lsfdpmqPVWPSTIIISAIAFLCLPQAFHVAVvenea---pvhtRTAAWLY 297  Bradyrhizobium d...
NP_253413  215 -pegLEVWLLQNQtalttl-----------htplaeGPWRTLLLVFFAAAIVMPHMFHMIFtenlnpralisaSWGLPLF 282  Pseudomonas aeru...
Feature 1                                                                                    # 
2XQ2_A     291 AFLALIVPFLVVLPGIAAYVItsdpqlmaslgdiaatnlpsaanadkaYPWLTQFlp--------vgVKGVVFAALAAAI 362  Vibrio parahaemo...
EDZ61549   280 IIMPLLTTLPLIIIAIIGSAHfpeldk---------------agseqiILLMLNKlthie---gmsiVITIFVAAAIAAI 341  Campylobacterale...
AAR37512   280 VFMPLVTTMFMMTVGWVGLAQfpdlds----------------rgseqITILMLQdiglrv-pamgiMIILFLSAAVAAI 342  uncultured marin...
NP_952480  297 PAYMFLINLFVMPIALGGILQtggvl-----------------gadffVLTLPLQtgh-------swLALLAFLGGFSAT 352  Geobacter sulfur...
NP_718326  278 PLYLALFGLFVGPLALAGKLIlgdsv-----------------aadtyVINLPLAldh-------plLAVIALLGTLSAA 333  Shewanella oneid...
YP_205762  277 PSYLVLIGLFVLPISWAGQVLlsggvs---------------dsfvisVPLSVGAe----------nMALLAFVGGTSAA 331  Vibrio fischeri ...
NP_229958  279 LLLMSLFVLPIAWTGQGLLPNtspdt------------------fvisLPVFAGAh----------dIALLAFLGGTSAA 330  Vibrio cholerae ...
YP_353243  282 PLYMFLMSLFVVPIAVVGLEL---------------------------LPEGANPdlfvltvpldrgQGGLAMLAFLGGF 334  Rhodobacter spha...
NP_772529  298 PAYLALFSLLILPIAAAGLTRfgamm-----------------dpdtyVISLPIAada-------stVSLIAFLGGLSAA 353  Bradyrhizobium d...
NP_253413  283 LLLMSLAVPPILWAGLRLGASttpey------------------ytigLGLAVDSp----------aLALAAFIGGISAA 334  Pseudomonas aeru...
Feature 1       ##                                                                             
2XQ2_A     363 VSSLASMLNSTATIFTMDIykeyispd--------------sgdhklvNVGRTAAVVALIIaaliapmlggigqcfqyiQ 428  Vibrio parahaemo...
EDZ61549   342 MSTVDSAMLAIASLFTQDIyhkqnpq---------------asqkkltYVGKVFSWIIMALmvvlavnl---pstiwwlI 403  Campylobacterale...
AAR37512   343 MSTVDSALLAISSMVTKDLyghfkpn---------------kkqsdliKFGKIFSWIIMALavllaiel---pqtiwrlM 404  uncultured marin...
NP_952480  353 AGMIIVESVAISTMFLNHLlmpivvklkp----------rpwfptmliNLKRLCIFVVVFLgyiyqtvvg-etfmlvnmG 421  Geobacter sulfur...
NP_718326  334 TGMVIVAVVTISVMVSNEWlvpvvlrtgnir-----eknfsqfsqmllNARRLAIVIILGLgygsylala-dsdslshlG 407  Shewanella oneid...
YP_205762  332 SGMVIVSTIALAIMVSNDLvlplllrkvktt-----srtfshfshllvSIRRALILLLLLGawgfyqald-sidslsviG 405  Vibrio fischeri ...
NP_229958  331 SGMVIVSTIALAIMVSNDLvmplllrrmrlsq---rthrhfsgllvviRRTLILLLLFGAWgfylvlds---ipslsaiG 404  Vibrio cholerae ...
YP_353243  335 SSATAMVIVAAVALATMVSnhivmplwlslrpmpavsgdvrrlvllsrRISIAGVLALGYGyyrfsgg----ssalaaiG 410  Rhodobacter spha...
NP_772529  354 TGMVIMTSVALSTMLCNDVimplllrsrffgl----raqsrpmtsvlvAVRRLSILGILLLaylthrlvn-qaypltviG 428  Bradyrhizobium d...
NP_253413  335 SGLTIVMTLALSGMVLNHLvlplyqppa-----------qgniyrwlkWTRRLLIVAIIMAsyafylllg-aeqdlsnlG 402  Pseudomonas aeru...
Feature 1                                                                                      
2XQ2_A     429 EYTGLVSPGILAVFLLGLFWKkttskGAIIGVVASIPFALFlkfmp--------------------lsmpfMDQm----- 483  Vibrio parahaemo...
EDZ61549   404 QMKLEILVHIAPAIMLGIHFKklshkSILYGLLTGVGITLIflltsl------------------pskpfgFHAg----- 460  Campylobacterale...
AAR37512   405 EIKLELLCQISPSIFLGIHYKnlqskSVLAGVIVGTFIALLiiftpgl-----------------pakpwgIHAg----- 462  uncultured marin...
NP_952480  422 LISFAAAAQFGPALLGGLYWRrgnksGALTGIVLGFIFWFYtlllpsiii-------------sgwlpraiLDQgpfg-- 486  Geobacter sulfur...
NP_718326  408 MLSFGAFAQLAPALVGGLYWKhgnraGVFLGLSVGFSLWFYimlsgmtgnqs--------paalmssnidlLDAitpn-- 477  Shewanella oneid...
YP_205762  406 LLAFAAIAQFAPALIGGLYWRqgnrkGVYAGLIIGFLVWLItlmsqtqmlagsaennfllwvitppewlqsLNVmtsd-- 483  Vibrio fischeri ...
NP_229958  405 FLSFSAITQFAPAIFGGMYWRegnrkGVYVGLAVGFTLWLItlmsatdmlagdas---nnvllwvitppdwLVAlglksa 481  Vibrio cholerae ...
YP_353243  411 LISFVGVAQILPAMLGGIFWRgatrtGTLWGLSLGFAVWVYtlflps-------------------fgpdaIFSarlla- 470  Rhodobacter spha...
NP_772529  429 LLSFVAVAQFGPAFVGGLYWPrankvGASVGIAAGFCIWSYtlllps-------------------aaplwPAVgeivr- 488  Bradyrhizobium d...
NP_253413  403 IVSFVATLQFLPGALSVLYWPtanrrGFISGLIAGMLVWAItmllplmgnvqglyl-plfdviyvlddsnwHLAa----- 476  Pseudomonas aeru...
Feature 1                         
2XQ2_A     484 ----LYTLLFTMVVIAFTS 498  Vibrio parahaemolyticus
EDZ61549   461 ----VVGLLLNFLVVYFHH 475  Campylobacterales bacterium GD 1
AAR37512   463 ----IWGLIANVSVLGMHQ 477  uncultured marine bacterium 159
NP_952480  487 itllKPTELFGLAGFDIWT 505  Geobacter sulfurreducens PCA
NP_718326  478 vrdaLTALFANIACYVLGS 496  Shewanella oneidensis MR-1
YP_205762  484 -wgmMLSLSLNSILFILVS 501  Vibrio fischeri ES114
NP_229958  482 dwgmLLSVTLNTLCYIGVS 500  Vibrio cholerae O1 biovar El Tor str. N16961
YP_353243  471 egpfGIGWLRPQALFGVEG 489  Rhodobacter sphaeroides 2.4.1
NP_772529  489 lgpwQLAWLKPNALFGIDG 507  Bradyrhizobium diazoefficiens USDA 110
NP_253413  477 ----LSSLAANVLVFTLVS 491  Pseudomonas aeruginosa PAO1

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