Conserved Protein Domain Family
RpsD

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COG0522: RpsD (this model, PSSM-Id:223596 is obsolete and has been replaced by 440288)
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 223596
Aligned: 76 rows
Threshold Bit Score: 118.566
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1346661    1 MPRKANllkSLARGRVRTSFNKYNLf----nLYKKGGVDLKSKSLyQQKWtAKQETRAYHGEHLTEKRWQTVFKPk---- 72  baker's yeast
19173632   1 MAGKKG----SKR--ASTPRDPFEK------ERLIREAQLVGVYGlKNKH-ELWVMEKIFAKDKERARILLTSTNped-i 66  Encephalitozoon cun...
19173672   1 -MRELKf--HEKKLLKQVNFLEWKNtnt-arEHLAIAKYGLRDREeYTKYsRIVGKVRKLAEALARLKESDPVRT----- 71  Encephalitozoon cun...
19115815   1 -MRILKh--HEQKLLRKVDFLNYKNddnnhrDVMVMRRYHISKREeYQKYnIICGKFRQLAHRLSLLDPTDPFRL----- 72  fission yeast
1173181    1 MPSAPRk--QSKT--YKVPRRPFES------ARLDAELKLAGEYGlRNKH-EIWRVALTLSKIRRAARELLTLDEkdpkr 69  fission yeast
6094199    1 MPSAPRk--QSKT--YKVPRRPFES------ARLDAELKLAGEYGlRNKH-EIWRVALTLSKIRRAARELLTLDEkdpkr 69  fission yeast
15790214   1 MA-LPG---ENTK-FYETPNHPYQG------ERIAEESDLLSRYGlKNKE-ELWRAQSELRDYRREARRLLGQTGt---- 64  Halobacterium sp. N...
585935     1 MPRAPRt--YSKT--YSTPKRPYES------SRLDAELKLAGEFGlKNKR-EIYRISFQLSKIRRAARDLLTRDEkdpkr 69  baker's yeast
418596     1 MVRKLKh--HEQKLLKKVDFLEWKQdqg-hrDTQVMRTYHIQNREdYHKYnRICGDIRRLANKLSLLPPTDPFRR----- 72  baker's yeast
6094198    1 MPRAPRt--YSKT--YSTPKRPYES------SRLDAELKLAGEFGlKNKK-EIYRISFQLSKIRRAARDLLTRDEkdpkr 69  baker's yeast
1346661   73 lDSVAQLDASLRGGEIKET---------------PFLLQTFAVLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKI 137 baker's yeast
19173632  67 pINGRSLLRRLMKYGILGGidlcdkqevvnglnkVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIV 146 Encephalitozoon cun...
19173672  72 -TITKKLVGRLYSVGVIKNrkl---------vdcT-KVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVV 140 Encephalitozoon cun...
19115815  73 -QYENLLLEKLFDMGILPSkskm--------sdiENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVI 143 fission yeast
1173181   70 lFEGNAIIRRLVRLGILDEtrmk--------ldyVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIV 141 fission yeast
6094199   70 lFEGNAIIRRLVRLGILDEsrmk--------ldyVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIV 141 fission yeast
15790214  65 -VSGEEFVARLQRIGILSEeer---------lddVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRV 134 Halobacterium sp. N...
585935    70 lFEGNALIRRLVRVGVLSEdkkk--------ldyVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIV 141 baker's yeast
418596    73 -KHEQLLLDKLYAMGVLTTkski--------sdlENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLI 143 baker's yeast
6094198   70 lFEGNALIRRLVRVGVLSEdkkk--------ldyVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIV 141 baker's yeast
1346661  138 KHPSYTLKPGDMFSVKpdkvlealgakkpsfqealkiDKTQIVLWNKYVKEAKTEpkevwekklenfekmsdsnpkklqf 217 baker's yeast
19173632 147 DVPGFMVRADKEPLIE---------------------YNPYSRYGDKGKKK----------------------------- 176 Encephalitozoon cun...
19173672 141 YDPSTIISKAMEDFVS---------------------WVDKSKIKRKIDEFN---------------------------- 171 Encephalitozoon cun...
19115815 144 TDPAYLVTRSLEDFVT---------------------WTDTSKIKRTIAKYN---------------------------- 174 fission yeast
1173181  142 NVPSFVVRLDTQKHID---------------------FALSSPYGGGRPGRCKRK------------------------- 175 fission yeast
6094199  142 NVPSFVVRLDAQKHID---------------------FALSSPYGGGRPGRCKRK------------------------- 175 fission yeast
15790214 135 TEPSYTVPVSEENTLA---------------------FDETSDLTDELHPARAGA------------------------- 168 Halobacterium sp. N...
585935   142 NIPSFMVRLDSEKHID---------------------FAPTSPFGGARPGRVARR------------------------- 175 baker's yeast
418596   144 NDPAYLVTRNMEDYVT---------------------WVDNSKIKKTLLRYR---------------------------- 174 baker's yeast
6094198  142 NIPSFMVRLDSEKHID---------------------FAPTSPFGGARPGRVARR------------------------- 175 baker's yeast
1346661  218 qeflrqynknlesqqynalkgctqegilRKLLNVEKEIGKSnneplSIDELKQGL 272 baker's yeast
19173632 177 ---------------------------------AEAKVGEE-------------- 184 Encephalitozoon cuniculi
19173672 172 -----------------------------------GELDDF-----NYV------ 180 Encephalitozoon cuniculi
19115815 175 -----------------------------------DKLDDY-----DLL------ 183 fission yeast
1173181  176 ------------------------------RLRSQ-EGGEG-----EEAEEE--- 191 fission yeast
6094199  176 ------------------------------RLRSQQEGGEG-----EEAEEE--- 192 fission yeast
15790214 169 ----------------------------QE------------------------- 170 Halobacterium sp. NRC-1
585935   176 ----------------------------NAARKAEASGEAA-----EEAEDEE-- 195 baker's yeast
418596   175 -----------------------------------NQIDDF-----DFS------ 183 baker's yeast
6094198  176 ----------------------------NAARKAEASGEAA-----DEADEADEE 197 baker's yeast
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