4REQ


Conserved Protein Domain Family
MM_CoA_mut_B12_BD

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cd02071: MM_CoA_mut_B12_BD 
Click on image for an interactive view with Cn3D
methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Statistics
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PSSM-Id: 239022
Aligned: 32 rows
Threshold Bit Score: 148.509
Created: 12-Jan-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
B12 bindingcobalt ligand
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:B12 binding site [chemical binding site]
Evidence:
  • Structure:4REQ; Propionibacterium methylmalonyl CoA mutase
  • Citation:PMID 9655823

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #######  #                                    ### ###                   
4REQ_A      598 RILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPlfqtPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGrp 677 Propionibacteriu...
148683       26 RIVTAASLFDGHDAAINIMRRLLQAQGAEVIHLGhdrsVEEVVTAAIQEDAQGIALSSYQGGHVEYFSYLIERLRARGag 105 Frankia sp.
21542427    607 RIMVAKMGQDGHDRGAKVIATGFADLGFDVDVGPlfqtPLEAAQQAVDADVHVIGASSLAAGHLTLIPQLIGELKKLGrp 686 Caenorhabditis e...
NP_000246   616 RLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPlfqtPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSLGrp 695 human
1360605      14 RFVTVAALFDGHDATINIMRRILQSSGAEVIHLGhnrsVEEVVNCAIQEDVQGIAMTSYQGGHIEYFKYMYDLLQERGan 93  Synechococcus sp...
ZP_00358667 596 RILVAKIGQDGHDRGAKVVATAFADLGFDVDIGSlfqtPEEVARQAVENDVHVVGISSLAGGHKTLLPQLVEELRKLGre 675 Chloroflexus aur...
YP_148223   598 RILIAKMGQDGHDRGAKVIATAFADLGFDVDIGPlfqtPEETARQAVENDVHAVGISSLAGGHKTLVPQLVAELEKLGrg 677 Geobacillus kaus...
XP_420055   614 RILVAKMGQDGHDRGAKVIATGFADIGFDVDIGPlfqtPREVAQQAVDADVHCVGVSTLAAGHKTLVPELIKELDALGrp 693 chicken
NP_661694   123 RILVAKVGQDGHDRGAKVIAAAFADIGFDVDISPlfqtPEEIVQQALDNDVHIVGISSLAGGHKTLVPQVVEGLKEARrg 202 Chlorobium tepid...
CAA47311    586 RILIAKMGQDGHDRGAKVIASAYSDLGFDVDLSPmfstPEEIARLAVENDVHVVGASSLAAGHKTLIPELVEALKKWGre 665 Escherichia coli
Feature 1               #                    #  #      #      
4REQ_A      678 dILITVGGV---IPEQDFDELrkdGAVEIYTPGTvi-peSAISLVK 719 Propionibacterium freudenreichii subsp. shermanii
148683      106 nVRVYGGGGgviLPAEIDLLHa-rGVARIFSPQDgq-rlGLAKMIN 149 Frankia sp.
21542427    687 dILVVAGGV---IPPQDYKELydaGVALVFGPGTrlpacANQILEK 729 Caenorhabditis elegans
NP_000246   696 dILVMCGGV---IPPQDYEFLfevGVSNVFGPGTripkaAVQVLDD 738 human
1360605      94 hIKIFGGGGgviLPNEIKELEs-yGIAEILFADDgr-riGTQGMIN 137 Synechococcus sp. PCC 7942
ZP_00358667 676 dIMVVIGGI---IPPQDYDFLrahGAALIFGPGTii-pvAAEKLLR 717 Chloroflexus aurantiacus
YP_148223   678 dILVFVGGV---IPPQDYAFLyehGAAAIFGPGTvi-peSAEKVLE 719 Geobacillus kaustophilus HTA426
XP_420055   694 dILVICGGV---IPPQDYDFLykaGVTNVFGPGTri-pkAAVQVLD 735 chicken
NP_661694   203 dILVIAGGV---IPERDYDYLyerGIAGVFGPGTvi-aeAAIKLLA 244 Chlorobium tepidum TLS
CAA47311    666 dICVVAGGV---IPPQDYAFLqerGVAAIYGPGTpm-ldSVRDVLN 707 Escherichia coli

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