Conserved Protein Domain Family
recf

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TIGR00611: recf 
recF protein
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 273173
Aligned: 13 rows
Threshold Bit Score: 353.583
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q59586         1 MYVRHLG---------LRDFRSWACVDLE---LHPGRT-VFVGPNGYGK--TNLIEALWYSTTLGSHRVSADLPLIRVGT 65  Mycobacterium t...
P50925         1 MKLKAIE---------LKNFRNYEELKLD---FHPNLN-IFLGQNAQGK--TNILEAIHFLALTRSHRTSHDKELISWSQ 65  Lactococcus lac...
AAA85783       1 MWIKELE---------LKHYRNYDHLLAS---FSSGLN-VFIGNNAQGK--TNFLEAIYFLSLTRSHRTRADKELIHFDH 65  Streptococcus p...
P05651         1 MYIQNLE---------LTSYRNYDHAELQ---FENKVN-VIIGENAQGK--TNLMEAIYVLSMAKSHRTSNDKELIRWDK 65  Bacillus subtil...
P29232         1 MKLNTLQ---------LENYRNYDEVTLK---CHPDVN-ILIGENAQGK--TNLLESIYTLALAKSHRTSNDKELIRFNA 65  Staphylococcus ...
P50916         1 MFARHLG---------LTDFRSWARVDLD---LEPGRT-VFVGPNGFGK--TNLVEALWYSATLGSHRVATDAPLIRAGA 65  Mycobacterium s...
P36176         1 MHVTHLS---------LADFRSYARVEVP---LDPGVT-AFVGPNGQGK--TNLVEAVGYLATLGSHRVSSDAPLVRMGA 65  Streptomyces co...
P22839         1 MILSRLL---------IRHFRNIEQADLP---LADGFN-FLVGPNGSGK--TSILEAIYTLGHGRAFRSAQANRVIQHDE 65  Proteus mirabilis
P43767         1 MAISRLL---------VEKFRNLTAVDLD---FDPCFN-FLIGNNGSGK--TSLLEAIFYLGHGRSFKSAVTNRIISYDE 65  Haemophilus inf...
P24718         1 MPLSRLI---------INNFRNLQSLDLE---LSPNFN-FIVGHNGSGK--TSLLEAIFYLGHGRSFKSHISNRIIHYQA 65  Actinobacillus ...
P49997         1 MYGFRLCrpcrcgckpATPPRCPSAVTVTrcvTSARVNqYISGPNGSGKrpAYWRRSTCSAWQLSSFRSQRLSPVIQHEQ 80  Azotobacter vin...
AAC67665       1 MRVLSLF---------LKDFRNYTDLRLE---LGPEMN-SIFGLNAQGK--TNLLEALYILSLGRSFRTSRLTDAIRFGA 65  Chlamydia trach...
WP_001547928   1 MSLTRLL---------IRDFRNIETADLA---LSPGFN-FLVGANGSGK--TSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65  Escherichia coli
Q59586        66 DRAVISTIVVNdgRECAVDLEIATGRVNK-ARLNRSSVR--STRDVVGVLRAVLFAPEDLGLVRGDPADRRRYLD-DLAI 141 Mycobacterium t...
P50925        66 QEMKVSGVGEK--AHATIPLEVQLSPKGRiAKANHLKEN--RLADYIGQLKILMFAPENLELVKGSPATRRKFMDiELGQ 141 Lactococcus lac...
AAA85783      66 STVSLTGKIQR--ISGTVDLEINLSDKGRvTKINALKQA--KLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDiDLGQ 141 Streptococcus p...
P05651        66 DYAKIEGRVMK--QNGAIPMQLVISKKGKkGKVNHIEQQ--KLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDmEIGQ 141 Bacillus subtil...
P29232        66 DYAKIEGELSY--RHGTMPLTMFITKKGKqVKVNHLEQS--RLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDmELGQ 141 Staphylococcus ...
P50916        66 ERAIVSTIVVNegRELAVDLEITSGRANK-ARLNRSPVR--SAREILGVLRAVLFSPEDLSLVRGDPGDRRRYLD-ELAT 141 Mycobacterium s...
P36176        66 ERAVIRAQVRQgeRQQLIELELNPGRANR-ARVNRSSQV--KPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLD-ELIT 141 Streptomyces co...
P22839        66 NAFILHGRLSGldEESRGYSIGLSKDREGnSTVRIDGSDghKIAELAKLLPMQLITPEGFTLLNGGPKYRRAFIDwGCFH 145 Proteus mirabilis
P43767        66 PHFTLFGQIQEsqHQW---SIGLQKLRQGnTLVKINGEDgnKISDLAHLLPMQLITPEGLTLLNGGPSYRRAFLDwGLFH 142 Haemophilus inf...
P24718        66 EDFVLHARIDEgqHQW---SVGIQKKRSGdTLLKINGEDgnKISDLAHLLPMQVITPEGLTLLNGGPTFRRAFLDwGLFH 142 Actinobacillus ...
P49997        81 PACTVFGQVLWndGRVR--NLGVARNRLGeLQIRIDGQNvrSAAQLAESLPLQLINPDSFRLLEGAPKVRRQFLDwGVFH 158 Azotobacter vin...
AAC67665      66 SHFFIEAVFSH--KEVFHTLSIQVDKKGKkILFDGAPIT--KLSELVGLFPVILFSIKDIAIIEGSPSERRRFLDlLLAQ 141 Chlamydia trach...
WP_001547928  66 EAFVLHGRLQGeeRET---AIGLTKDKQGdSKVRIDGTDghKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDwGCFH 142 Escherichia coli
Q59586       142 VRrPAIAAVRAEYERVLRQRTALLKSVpgaRYRGDRgv-fDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLA 220 Mycobacterium t...
P50925       142 IH-AVYLYDSMRYNRALKERNAYLKFD---KDKIDK----NFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLT 213 Lactococcus lac...
AAA85783     142 IK-PVYLSELSHYNHVLKQRNSYLKS----AQQIDA----AFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAIS 212 Streptococcus p...
P05651       142 VS-PVYLHDLSLYQKILSQRNHFLKQLq-tRKQTDR----TMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGIS 215 Bacillus subtil...
P29232       142 IS-AVYLNDLAQYQRILKQKNNYLKQLq-lGQKKDL----TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGIT 215 Staphylococcus ...
P50916       142 TRrPALAGVRADYDKVVRQRTALLKTAagaRYRGDRsv-iDTLEVWDGHLAAHGAALVASRVKLVEELQPEVEKAYQLLA 220 Mycobacterium s...
P36176       142 ARsPRMAGVRSDYDRVLKQRNTLLKSAalaRRHGGRtmdlSTLDVWDQHLARAGAELLAQRLDLIASVQPLADKAYEQLA 221 Streptomyces co...
P22839       146 NE-PRFFAAWSDLKRVLKQRNAALRQAs---SY-------RQLLPWDKELILLTEQISQWRAEYTEDIAKDIEETCQLFL 214 Proteus mirabilis
P43767       143 HQ-TSFYSAWSNLNRLLKQRNAALAQNq---PY-------SAIKIWDVELAKLAHQVSEWRAEYAEALSPEIEQTCQLFL 211 Haemophilus inf...
P24718       143 QY-TEFYSCWANLKRLLKQRNAALHQVr---SY-------AELKPWDIELAKLAEIVSQMRASYAEGLRPEIEKTCQFFL 211 Actinobacillus ...
P49997       159 VE-QRFLPAWDRLQTALRQRNSWLRHG---------------------------------------RIDPVSQAAWDREL 198 Azotobacter vin...
AAC67665     142 AS-DKYTEHISLYHKALDQRNASIKAQn----Q-------KAISAWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTL 209 Chlamydia trach...
WP_001547928 143 NE-PGFFTAWSNLKRLLKQRNAALRQVt---RY-------EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL 211 Escherichia coli
Q59586       221 PESRSASIGYRasmdvtgpseqsdidrQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAKGFASHGEAWS 300 Mycobacterium t...
P50925       214 HGKENLKIIYN----------------QNVKTDFSKELLSRQDHDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRT 277 Lactococcus lac...
AAA85783     213 NGLESLSLSYQssvv--------fdkkTNIYQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN-ANFASQGQHRS 283 Streptococcus p...
P05651       216 RGLEELTLKYHtaldvs-----dpldlSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRT 290 Bacillus subtil...
P29232       216 NDKEALSLNYLpslkfd-----yaqneAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRT 290 Staphylococcus ...
P50916       221 PASRPAAIRYRssveaied-apgpesvEFYEAALLDALARRRDAELERGVCLVGPHRDDLELRLGDQPAKGFASHGESWS 299 Mycobacterium s...
P36176       222 PGGGPVALEYKpsapg------eahtrEDLYEQLMAALAEARKQEIERGVTLVGPHRDDLLLKLGSLPAKGYASHGESWS 295 Streptomyces co...
P22839       215 PEFTLKVSFQRg---------------WDKETDYAQLLERQFERDKVLSYTSLGAHKADLRIRANGTPVEDMLSRGQLKL 279 Proteus mirabilis
P43767       212 PELEINVSFHQg---------------WEKNADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVLSRGQLKL 276 Haemophilus inf...
P24718       212 PELEIGVSFHQg---------------WEKGTDYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVLSRGQLKL 276 Actinobacillus ...
P49997       199 CLRRSDSELLR----------------AGRERCSARFLLLPFRAISNWGIPRR-PQRADRRRRLARTMPRTCCRAVTRSW 261 Azotobacter vin...
AAC67665     210 KETLSLRYESSlitee-------sptlNDIASNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVAKFSSEGQKHS 282 Chlamydia trach...
WP_001547928 212 PEFSLTFSFQRg---------------WEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL 276 Escherichia coli
Q59586       301 LAVALRLAAYQLLRVDGGE-PVLLLDDVFAELDVMRRRALATAAESA-EQVLVTAAVLEDIPagWDARRVHIDVRADdtG 378 Mycobacterium t...
P50925       278 VALSIKLAEIDLILEETGEyPILLLDDVMSELDNHRQLDLIETSLGK-TQTFITTTTLDHLK--NLPENLSIFHVNA--G 352 Lactococcus lac...
AAA85783     284 LILSLKMAEVSLMKALTGDnPILLLDDVMSELDNTRQTKLLETVIKEnVQTFITTTSLDHLS--QLPEGIRIFHVTK--G 359 Streptococcus p...
P05651       291 TALSLKLAEIDLIHEEIGEyPILLLDDVLSELDDYRQSHLLHTIQGR-VQTFVTTTSVDGIDh-ETLRQAGMFRVQN--G 366 Bacillus subtil...
P29232       291 TALSIKLAEIELMNIEVGEyPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDh-EIMNNAKLYRINQ--G 366 Staphylococcus ...
P50916       300 MALALRLGAYELLCSDGVE-PVLLLDDVFAELDTSRRRALATVAGSA-EQVLVTAAVGEDIPedWDARRVEIRMVEDdgG 377 Mycobacterium s...
P36176       296 YALALRLASFDLLRAEGNE-PVLVLDDVFAELDARRRERLAELVAPG-EQVLVTAAVDDDVPhvLAGARFTV---AE--G 368 Streptomyces co...
P22839       280 LMCALRLAQGEYFTRKNGQrCLYLLDDFASELDANRRQLLAERLKSTqAQVFVSAITSGQVKdmLDVNSR---LFSVehG 356 Proteus mirabilis
P43767       277 LMCALRLAQGEHLMKEKQRhCIFLIDDFASELDQYKRALLAERLQQSgSQVFVTAITQRQLKemQVENKK---MFSVhnG 353 Haemophilus inf...
P24718       277 LMCALRLAQGEYLVAQKERqCLFLIDDFASELDPIKRELLAHRLRESgSQVFVTAITKDQLNqmQWQESEQDSLFQVqqG 356 Actinobacillus ...
P49997       262 WSVRLKIAQGHLVDRARRE-CIYLVDDLPSELDEQHRRALCRLLEELhCQVFITCVDLEALRegWRTDTP-VALFHVnrA 339 Azotobacter vin...
AAC67665     283 LLAVLRFAECVYLQEEFCIhPLLCMDDIHACLDQQRLDQLLQLSNSLgQVVTTSTICPDHRSttSCIFHVTQAQVSLvaP 362 Chlamydia trach...
WP_001547928 277 LMCALRLAQGEFLTRESGRrCLYLIDDFASELDDERRGLLASRLKATqSQVFVSAISAEHVIdmSDENSK---MFTVekG 353 Escherichia coli
Q59586       379 SM 380 Mycobacterium tuberculosis
P50925       353 TI 354 Lactococcus lactis subsp. cremoris
AAA85783     360 TV 361 Streptococcus pyogenes
P05651       367 AL 368 Bacillus subtilis subsp. subtilis str. 168
P29232       367 EI 368 Staphylococcus aureus subsp. aureus Mu50
P50916       378 RV 379 Mycobacterium smegmatis
P36176       369 TV 370 Streptomyces coelicolor A3(2)
P22839       357 KI 358 Proteus mirabilis
P43767       354 II 355 Haemophilus influenzae Rd KW20
P24718       357 ML 358 Actinobacillus pleuropneumoniae
P49997       340 LI 341 Azotobacter vinelandii
AAC67665     363 QS 364 Chlamydia trachomatis D/UW-3/CX
WP_001547928 354 KI 355 Escherichia coli
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