1FWQ,1HXR


Conserved Protein Domain Family
RabGEF

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cd00246: RabGEF 
Click on image for an interactive view with Cn3D
Nucleotide exchange factor for Rab-like small GTPases (RabGEF), Mss4 type; RabGEF positely regulates the function of Rab GTPase by promoting exchange of GDP for GTP; members of the Rab subfamily of Ras GTPases are important in vesicular transport;
Statistics
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PSSM-Id: 238150
Aligned: 6 rows
Threshold Bit Score: 131.914
Created: 4-Sep-2001
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
zinc bindingputative Rab
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:zinc binding site [ion binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #    #                                                                      
1FWQ_A     19 KAVLCQR--CGSRvl--------qPGTALFSRRQLFLPSmrkkpalsdgsnpDGDLLQEHWLVe-DMFIFENVGFTKDVG 87  human
1HXR_A     11 KAVLCQR--CGSRvl--------qPGTALFSRRQLFLPSmrkkpdlvdgsnpDGDVLEEHWLVn-DMFIFENVGFTKDVG 79  Norway rat
Q91X96     19 KAVLCQR--CGSRvl--------qPGTALFSRRQLFLPSmrkkpdladgsnpDGDLLQEHWLVn-DMFTFENVGFTKDVG 87  house mouse
EAA10267   23 TNVKCDR--CGSLilkstnsdydtTEFVLPLAKQKRQPVeqea------eefTTETLKDFWMVk-DMYTFENIGFSNTVD 93  Anopheles gambiae ...
P32601      2 SKATCSFegCHSAvit------inDDNIINLPEQVHSEFkllen----rtmrDATPSESNFLVvpDVWDFDNVGVSREIP 71  baker's yeast
O43057      4 LRIVCQH--CPSVvfn------nkRPDVVKRPTMSAMLHse----------tQEDLETDDFFLlkDPFAFDNVSVSKPLA 65  fission yeast
Feature 1                                     #  #                             
1FWQ_A     88 --------------------------NIKFLVCADCEIGPIGWHCLd---dKNSFYVALERVSHE 123 human
1HXR_A     80 --------------------------NVKFLVCADCEIGPIGWHCLd---dKNSFYVALERVSHE 115 Norway rat
Q91X96     88 --------------------------NIKFLVCADCEIGPIGWHCLd---dKNSFYVALERVSHE 123 house mouse
EAA10267   94 --------------------------NRKYLTCADCEVGPIGYHDLe----TKKSYIALARVKHE 128 Anopheles gambiae str. PEST
P32601     72 ssilgdlsdksdfvfeygnsswkikkCLKYLICADCDKGPIGIICKvqdqtKNEERVLHLLSLRS 136 baker's yeast
O43057     66 n-------------------------NYKLLACADCEKGPLGYYDS-----KNNEYLLLCSLEKN 100 fission yeast

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