Conserved Protein Domain Family
cbb3_Oxidase_I

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cd01661: cbb3_Oxidase_I 
Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. The fourth subunit (ccoQ) has been shown to protect the core complex from proteolytic degradation by serine proteases. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. The polar residues that form the D- and K-pathways in subunit I of other cytochrome c and ubiquinol oxidases are absent in cbb3. The proton pathways remain undefined. A pathway for the transfer of pumped protons beyond the binuclear center also remains undefined. It is believed that electrons are passed from cytochrome c (the electron donor) to the low-spin heme via ccoP and ccoO, respectively, and directly from the low-spin heme to the binuclear center.
Statistics
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PSSM-Id: 238831
Aligned: 13 rows
Threshold Bit Score: 630.542
Created: 15-Sep-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:Binuclear center (active site) [active site]
Evidence:
  • Comment:The high-spin heme and CuB form the binuclear center, where O2 is reduced to water.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
P98055       24 AHDSLFAAHMWVLFFTLVVSTLLLLRRVSFlppvagp----pcrrteYFDEVVKYGVMATVFWGVVGFLVGVVVALQLAF 99  Agrobacterium tu...
AAR05968     25 AADFGFAVHMGIVCAAALAVAVLTMRHADYeaitrgll-kmpasqgrYDDDPIRWGVIATVFWGLAGFLAGLYIALQLAF 103 Sphingomonas ind...
EAM68028     24 GLDLAYRVHAVLIMLVAGGLFLWQVRQTGEervpa--------pqgeYMDGPVRAAAIATVFWGCTGFLVGVVIAFQLAF 95  Jannaschia sp. CCS1
CAA06279     35 ALDAPFAFHAALSAAASVAAVFCIVNRYFErpaalppa--eingrpnYNMGPIKFSSFMAMFWGIAGFLVGLIIASQLAW 112 Bradyrhizobium j...
YP_165019    30 GVPTVYVMHGWLIAGAAGWGLIWMINRATDpaqd---------vphaYNDKATKFGVVATFIWGVIGFAVGDILAWQLAI 100 Silicibacter pom...
AAK23382     36 THDPMFRLQIGTFALAGVIAAFALNAGLAGgtlqd--------hpdeYSDNVVKAGVIATMFWGAAGLLVGVIIAAQLSW 107 Caulobacter cres...
NP_867199    17 CRIRVWMLFNYGNLRIEMATGTPTNGPDDAalssdsgteevrleqfqYDDGIVRLFATATIVWGIVATLVGLIVAVLLVL 96  Pirellula sp. 1
NP_435566    30 GRFDPLGVHGAVVLLYSLALLYLIMSSSFGpppdp-------srisrYYDDPIKAGVWFTLFWAIFGMFIGVWAAAQLAW 102 Sinorhizobium me...
ZP_00194694  35 GRNDVLGYQGLLIVVFGALVMITLLRNLDApepde-------srlaeYYDDPIRVGIVLTMLWAIFGMFIGVWVAALLAW 107 Mesorhizobium sp...
NP_522554    47 GRPEEPAATGEQRTALEGISAAAEPSAPPAtsdadla---araaadrSSSLVVFVFLCSAMVWLLVASLAGLTASLKLHL 123 Ralstonia solana...
ZP_00275042  28 GLFDTSPAAARVIFADEEAGHSEDPASARHgivdrs-----reeadrSSAPVVFLFICCAMVWLLVASVAGLTASIKLHE 102 Ralstonia metall...
YP_158648    47 GRVEEPAVTSAAEHRLQRSVTAVAPVEPDPaalrtr------leadrSAARPAFVLLGFAVLWLLVASLAGLTSSIKLHE 120 Azoarcus sp. EbN1
ZP_00507783 114 RIDDPSLDDKAHGAMQAAAPPAAEPTSADQgevsdr------veadrSSAFPVFMFIAFACLWLLVGSVAGLIASYKLHE 187 Polaromonas sp. ...
Feature 1                                                                                       
P98055      100 PD---LNIAPYFNFGRMRPLHTSAVIFAFGGNALIATSFYVVQRTCRARLFGgnLGWFVFWGYNLFIIMAATGYLLGITQ 176 Agrobacterium tu...
AAR05968    104 PAl--NLGLEYTSFGRLRPLHTSAVIFAFGGNALIATSFYVVQRTCRARLAFpaLARFVFWGYQLFIVLAATGYLLGITE 181 Sphingomonas ind...
EAM68028     96 PVlnfEWAQPYLNFGRLRPLHTSAVIFAFGGNALIAATFYIGQRTCAVRMWGgnLSWFVFWGYQFFIVLAATGYLLGATQ 175 Jannaschia sp. CCS1
CAA06279    113 PAl--NFDLPWISFGRLRPLHTSAVIFAFGGNVLIATSFYVVQKSCRVRLAGdlAPWFVVVGYNFFILVAGTGYLLGVTQ 190 Bradyrhizobium j...
YP_165019   101 PDl--NGDMSWSNFGRLRPVHTTAVIFGFGGNALIATSFYVVQRTSRARLASetLPWLIFWGYNLFMLLSVSGYLAGITQ 178 Silicibacter pom...
AAK23382    108 PTifyFPDLGFLNFGRLRPLHTSAVIFAFGGNALIATSFYVVQRTCKARLAGgiTPWFVFWGYQLFIVLAATGYLMGATS 187 Caulobacter cres...
NP_867199    97 PSi--TGGLPWFSFARLRPLHTNAAIFAFAGNGIFAAVYYSTQRLCKARMWSdvLSRLHFWGWQLIIVLAAITLPLGITQ 174 Pirellula sp. 1
NP_435566   103 PSl--NFDTAWASFGRIRPAHTTGVIFGFGGNALIATSFHVVQRTSRARLADqlSPWFVLFGYNLFCILAVTGYFMGVTQ 180 Sinorhizobium me...
ZP_00194694 108 PEl--TFDAAWASFGRLRPAHTTGVIFGFGGNALIATSLHVVQRTSRARLPDqvSPWFVLLGYNLFCLLAVSGYFLGITQ 185 Mesorhizobium sp...
NP_522554   124 PDa--LATQAWLSFGRIRTIHLNAVAYGWAPMAGLGIAQFVLPRVLKTPLVGgnFAVLGAMMWNAGVVAGLGSIAVGLSD 201 Ralstonia solana...
ZP_00275042 103 PDl--LASVPWLSFGRIRTIHLNAVAYGWAPMAGLGIAMFLLPRLLKTELMGgrWAVLGAALWNAGLIAGIGSIAAGISD 180 Ralstonia metall...
YP_158648   121 PDw--LTQYAWLTFGRIRSIHLNAVAYGWAPMAALGIALWMMPRLLKTKLVGarFAISGALLWNLGLAVGIGCIAAGIND 198 Azoarcus sp. EbN1
ZP_00507783 188 PDw--LVQQAWLTFGRIRTVHLNAVIYGWSSNAALAVILWLLPRMLRTRLHGgiWAMMGGSLINTGIAAGIGAIAVGWSD 265 Polaromonas sp. ...
Feature 1                                                                                       
P98055      177 GREYAEPeWYVDLWLTIVWVAYLAT-FLGTILTRKEPHISVANWFYLSFIVTIAMLHIVNNLAvpvsflgvksysafSGV 255 Agrobacterium tu...
AAR05968    182 GKEYAEPeWYVDLWLTIVWVAYLVV-FGGTILRRSEPHIYVANWFYLSFILTIAMLHIVNNLSmpvswlgsksysafAGV 260 Sphingomonas ind...
EAM68028    176 SLEYAEPeWYVDLWLTIVWVAFLIV-YMGTILTRKEPHIYVANWFLLAFVITVAMLHLINNMAvpvsifgsrsvqvlSGV 254 Jannaschia sp. CCS1
CAA06279    191 SKEYAEPeWYADLWLTIVWVVYLLV-FLATIIKRKEPHIFVANWFYLAFIVTIAVLHLGNNPAlpvsafgsksyvawGGI 269 Bradyrhizobium j...
YP_165019   179 SKEYAEPeWYADLLLVVVWVGYLTL-YLRTLARRAEPHIYVSNWYYLGFIVVIAMLHIVNNLAvpvsiaypksyslfAGV 257 Silicibacter pom...
AAK23382    188 GKEYSEPeWYTDLWLTIVWVAYLLV-FLGTIWKRKEPHIYVANWFYLAFIVTVALLHVVNNAAvpvgllnhksygvfAGV 266 Caulobacter cres...
NP_867199   175 SREYAELeWPIDLLIAVVWLFIFGGnFLMTLIKRRERHMYVALWFYIATIVTVALLHVFNNLVipagwf--kgysvyAGV 252 Pirellula sp. 1
NP_435566   181 SKEYAEAeWYADLWLVIVWVTYFIL-YIRTLARRREPHIYVANWYYMAFIVVVAILHIINNLTvpvslghaksytiwSGV 259 Sinorhizobium me...
ZP_00194694 186 SKEYAEPeWYADIWLVVVWVAYFAL-YIRTLARRKEPHIYVANWYFMAFILVVAVLHIVNNLAvpvsfgsakaysafSGV 264 Mesorhizobium sp...
NP_522554   202 GLEWLEIpWQIGVLFAVGGALVGIP-LVLTLLATRVSHLYVSVWYMGCALFWFPVLYLVAKVPyv-----------hFGV 269 Ralstonia solana...
ZP_00275042 181 GLEWLEIpWQVDILFVIGGAFVGFP-LVLTLVNRKVDHLYVSVWYMGCALFWFPVLFLVANIPgl-----------hFGV 248 Ralstonia metall...
YP_158648   199 GMEWLEIpWQVGTLFAVGGALIGLP-LVFTLRHRQVEHLYVSVWYMGAALFWFPVLYIVAKLPnl-----------hFGV 266 Azoarcus sp. EbN1
ZP_00507783 266 GMEFLEIpWQIDIFIFVGFALVILP-ALYTLVNRRIEHLYVSVWYFTAALLWIAVLFGVANLPgv-----------hTGV 333 Polaromonas sp. ...
Feature 1                 #                                                 ##                  
P98055      256 QAALTQWWYGHNAVGFFLTAGFLGMMYYFIPKqvnRPVYSYRLSIIHFWALIFMYIWAGPHHLHYTALPdWAQTLGMVFS 335 Agrobacterium tu...
AAR05968    261 QDALTQWWYGHNAVGFFLTAGFLAMMYYFVPKqaeRPVYSYRLSIIHFWSLIFLYIWAGPHHLHYTALPdWAQTLGMVFS 340 Sphingomonas ind...
EAM68028    255 QSAMTQWWYGHNAVGFFLTAGFLGMMYYFVPKqaeRPVYSYKLSIIHFWALIFLYIWAGPHHLHYTALPdWAATLGMVFS 334 Jannaschia sp. CCS1
CAA06279    270 QDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKraeRPIYSYRLSIIHFWALIFLYIWAGPHHLHYTALPdWTQTLGMTFS 349 Bradyrhizobium j...
YP_165019   258 QDAMTQWWYGHNAVGFLLTAGFLGMLYYFLPKavnRPVYSYRMSIIGFWGITFLYLWAGSHHLHYTALPdWVQYLGTSMS 337 Silicibacter pom...
AAK23382    267 QDALVQWWYGHNAVGFFLTAGFLAMMYYFVPRrveRPVYSYRLSIVHFWALIFIYIWAGPHHLHYTALPqWAQTLGMTFS 346 Caulobacter cres...
NP_867199   253 QDAFMQWWYGHNAVAFFLTTPFLGLMYYFLPKaaeRPVFSYKLSIIHFWSLVFIYIWAGPHHLHYTALPeWASTLGMLFS 332 Pirellula sp. 1
NP_435566   260 QDSMVQWWYGHNAVAFFLTAGFLAMLYYYLPKraeRPIFSYRLSILSFWGITFFYMWAGSHHLHYTALPhWVQNLGMTFS 339 Sinorhizobium me...
ZP_00194694 265 QDAMTQWWYGHNAVAFFLTAGFLGMMYYYLPKraeRPIYSYRLSIISFWGITFMYMWAGSHHLHYTALPhWVQTLGMTFS 344 Mesorhizobium sp...
NP_522554   270 EQATMNWWFGHSVLGLFYTPLALASIYYFLPKiigKPIQSYGLSLLGFWTLAFLYGQVGGHHLVGGPVPgWLITLSIVQS 349 Ralstonia solana...
ZP_00275042 249 EQATMNWWFGHNVLGLFYTPLALASIYYFLPKiigQPVRSYGLSLLGFWALAFFYGQVGGHHLVGGPVPgWLITLSIVQS 328 Ralstonia metall...
YP_158648   267 EQATMNWWFGHNVLGLFYTPLSLAAVYYLLPKvigRPIQSYNLSLIGFWCLAFFYGQVGGHHLVGGPVPeWLITLSIVQS 346 Azoarcus sp. EbN1
ZP_00507783 334 QQATTNWWYGHNALGLWFTPVAVGAIYYFLPKiigRPVVSYNLSLLGFWTLAFFYGQVGGHHLIGGPVPgWLTTLSIVQS 413 Polaromonas sp. ...
Feature 1                                                                           #           
P98055      336 IMLWMPSWGGMINGLMTLSGAWDKIRtDPIVRMMVMAVAFYGMATFEGPMMSIKAVNSLSHYTDWTIGHVHSGALGWNGM 415 Agrobacterium tu...
AAR05968    341 VMLWMPSWGGMINGLMTLNGAWDRIRtDPIIRMMVMALAFYGMSTFEGPMMSVKAVNSLSHYTDWTIGHVHSGALGWNGL 420 Sphingomonas ind...
EAM68028    335 IVLWMPSWGGMINGLMTLQGAWDKLRtDPILRMMVTSLAFYGMSTFEGPMMSIRAVNSLSHYTDWTIGHVHSGALGWNGM 414 Jannaschia sp. CCS1
CAA06279    350 IMLWMPSWGGMINGLMTLSGAWDKLRtDPVLRMLVVSVAFYGMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGF 429 Bradyrhizobium j...
YP_165019   338 IILLVPSWASVFNGILTINGAWDKVRtDPAVRFMMVAILFYGLTTFEGSFMAIRPVNSLSHYTDWTVGHVHAGALGWVAF 417 Silicibacter pom...
AAK23382    347 IMLWMPSWGGMINGLMTLSGAWDKLRtDPVVRMMVVSIAFYGMSTFEGPVMSIRAVNALSHYTDWTIGHVHSGALGWVGF 426 Caulobacter cres...
NP_867199   333 LMLWMPSWGGMINGLLTLRGAWHKVAaDPVLKFFVVGVTFYGMSTFEGPMLSIKSINAFTHYTDWTIAHVHAGALGWNGF 412 Pirellula sp. 1
NP_435566   340 VMLLVPSWASAGNALLTLNGAWHKVRdDATLRFIMMAAFFYGLSTFEGSFLAVRPVNSLSHYTDWTVGHVHAGALGWVAL 419 Sinorhizobium me...
ZP_00194694 345 VVLLVPSWASAANALLTLNGAWHKVRdDATLRFMMVAAVFYGLSTFEGSFLAIRAVNSLSHYTDWTVGHVHAGALGWVAM 424 Mesorhizobium sp...
NP_522554   350 MMMLIPVVAFSVNLHQTMRGHFKALLySPTLRFVTFGGMMYTLSSVQGSFEALRSVNVITHFTHYTVGHAHLGLYAFVSF 429 Ralstonia solana...
ZP_00275042 329 MMMLIPVIAFSINQHQTLRGHFRQLIeSPTLRFVTFGGMMYTLSSIQGSFEALRAVNRVTHFTHYTVAHAHLGLYAFVSF 408 Ralstonia metall...
YP_158648   347 VMMIIPVVAFSVNQHLTMRGNFSALRhSPTLRFVVLGGMMYTLSSIQGSFEALRSVSTVTHFTHFTVAHAHLGLYGFVTL 426 Azoarcus sp. EbN1
ZP_00507783 414 VMMIIPVLAFTINMKGTLKGQMHLARySPTLRFMMFGGLMYLASSVQGSFEALRSINAVTHFTHFTVAHAHLGMYAFVTM 493 Polaromonas sp. ...
Feature 1                                                                                       
P98055      416 ITFGAIYYLTPKLWGRdrlyslqLVNWHFWLATLGIVVYAAVMWVAGIQQALMWREydsqg-flvySFAESVAALFPYYV 494 Agrobacterium tu...
AAR05968    421 ITFACLYYLTPRLWKRerlyslrLVNWHFWLATVGIVLYAASMWVAGIMQGLMWREygsdg-ylvyAFSEVVSAMFPMYL 499 Sphingomonas ind...
EAM68028    415 ITFGMLYYLFPKLWHTkly-smrAVSWHFWLATVGIVLYAASMWVTGIMEGLMWREvdaqg-flvnSFADTVEAKFPMYV 492 Jannaschia sp. CCS1
CAA06279    430 VSFGALYCLVPWAWNRkglyslkLVNWHFWVATLGIVLYISAMWVSGILQGLMWRAytslg-fleySFIETVEAMHPFYI 508 Bradyrhizobium j...
YP_165019   418 ITFGAMYKMVPWIWRRdgiyserLEAWHFWLALTGTLIYVGAMWNSGMTQALMWQTydadg-alyySFLDSVLAMHPYYA 496 Silicibacter pom...
AAK23382    427 ISFGAIYCLVPWLWKKpgmysnkLIEWHFWIATTGILLYIAAMWVSGVMEGLMWREytpqg-flaySFIETVSAKHIENV 505 Caulobacter cres...
NP_867199   413 MVFGMLYWLLPRLFQTkmw-sdkLVSLHFWTGTIGILLYIIPIYAAGLMQGWMWRAmddtghlmypDFIETTQSIVPLWW 491 Pirellula sp. 1
NP_435566   420 ITYGSLYTLVPAIWKRermysaaLVEVHFWLAFAGTVIYVFAMWNSGIIQGLMWRTytgdg-tlaySFVDSLVAMYPYYI 498 Sinorhizobium me...
ZP_00194694 425 ITFGALYTLTPAMWKRprmysntLVEVHFWCAVIGTLIYVFAMWNSGIIQGLMWRTynesg-tltySFIESLIAMHPYYI 503 Mesorhizobium sp...
NP_522554   430 VFFGSIYFIVPRITQRewp-ypsLITAHFWCAAIGIGIYFVALTIAGTLQGLTMLDas-------rPFIDSVTVTVPYLE 501 Ralstonia solana...
ZP_00275042 409 AFFGAIYFIVPRITGRewp-yrwMIYCHFWLAAGGICVYFVSLTIGGWLQGMAMLDaa-------rPFMDSVQVTIPYLK 480 Ralstonia metall...
YP_158648   427 VMFGAIYFAMPRIVSRewp-ypkLIALHFWLVTIGFAIYFVTLTIGGVLQGLSMLDas-------qPFMESVRVTLPYLQ 498 Azoarcus sp. EbN1
ZP_00507783 494 VFFGAIYFMMPRVLEWewp-ypwLITLHFWLAALGISIYFVGLTIGGWLQGTAMLDaa-------rPFGESVAVTLPWLK 565 Polaromonas sp. ...
Feature 1                               
P98055      495 MRALGGLMFLSGaLIMAYNVTMTI 518 Agrobacterium tumefaciens (strain T37)
AAR05968    500 IRAAGGLLYLSGaIVMAWNIGRTI 523 Sphingomonas indicum
EAM68028    493 VRGLGGVMFLSGaLIMAWNLWMTV 516 Jannaschia sp. CCS1
CAA06279    509 IRAAGGGLFLIGaLIMAYNLWMTV 532 Bradyrhizobium japonicum
YP_165019   497 ARAIGGLLYLIGaLIGAYNIYMTI 520 Silicibacter pomeroyi DSS-3
AAK23382    506 IRTVGGLMYLSGaLIMIVNMWKTI 529 Caulobacter crescentus CB15
NP_867199   492 LRVVGGVLYVSGmLMLGINSMMTW 515 Pirellula sp. 1
NP_435566   499 ARAFGGLLFLIGaVVATYNIWMTV 522 Sinorhizobium meliloti 1021
ZP_00194694 504 ARTVGGLFFLIGaVVGTYNIFMTI 527 Mesorhizobium sp. BNC1
NP_522554   502 ARSVGGALMVLGhLLFVVHFACVI 525 Ralstonia solanacearum GMI1000
ZP_00275042 481 ARSVGGTMMLAGhLCLVANFVCAI 504 Ralstonia metallidurans CH34
YP_158648   499 GRSIGGALMTLGhLVFAAHFVVMA 522 Azoarcus sp. EbN1
ZP_00507783 566 SRSVGGLVMSLGhLVFVGHFLAMA 589 Polaromonas sp. JS666

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