Conserved Protein Domain Family
RETR1_RHD

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cd22560: RETR1_RHD 
N-terminal reticulon-homology domain of Reticulophagy regulator 1
Reticulophagy regulator 1 (RETR1 or RETREG1), also called reticulophagy receptor 1 or FAM134B (family with sequence similarity 134, member B), is an endoplasmic reticulum (ER)-anchored autophagy receptor that regulates the size and shape of the ER. It regulates turnover of the ER by selective phagocytosis, mediating ER delivery into lysosomes through sequestration into autophagosomes. It promotes membrane remodeling and ER scission through its membrane bending activity, and targets the fragments into autophagosomes by interacting with ATG8 family modifier proteins such as MAP1LC3A, MAP1LC3B, GABARAP, GABARAPL1 and GABARAPL2. Loss of function of FAM134B is associated with diseases and cancer, including hereditary sensory and autonomic neuropathy type IIB (HSAN IIB), colorectal adenocarcinoma, and oesophageal squamous cell carcinoma, and other progressive neuronal degenerative diseases. FAM134B is also implicated in the suppression of viral replication during Ebola, Dengue, Zika, and West Nile viral infections. RETREG1/FAM134B contains an N-terminal reticulon-homology domain (RHD) that shows sequence similarity to ADP-ribosylation factor-like 6 binding factor 1 (Arl6IP1 or Arl6ip-1), an ER protein that has an important role in cell conduction and material transport. The RHD may function in inducing membrane curvature.
Statistics
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PSSM-Id: 411699
Aligned: 14 rows
Threshold Bit Score: 322.86
Created: 21-Sep-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9H6L5        67 AVTWLLGEPVLWLGc----------rADELLSWKRPLRSLLGFVAANLLFWFLALTPWRVYHLISVMILGRVIMQIIKDM 136 human
XP_005993553  11 EQRQQQLEAPWWSGgggdcaasllssLAAGLTWRRPLHSIALFVCTNWLFWFITLTSWRLYHLISLALLVAVVAQMIRDL 90  coelacanth
NP_001030022  67 AVTWLLGEPVLWLGc----------rADELLSWKRPLRSLLGFVAANLLFWFLALTPWRVYHLISVMILGRVIMQIIKDM 136 human
Q5E9K8        63 VVTWLLGEPALWLGg----------rADELLSWKRPLHSLLAFVGANLVFWFLALTPWRVYHLISVMILTRVIMQIIKDM 132 cattle
Q8VE91        50 ALTWLLGEPVLWLGw----------rADELLSWKRPLRSLLTFLGANLLFWFLALTPWRVYHLISVMILGRVIMQIIKEM 119 house mouse
NP_001030023  50 ALTWLLGEPVLWLGw----------rADELLSWKRPLRSLLTFLGANLLFWFLALTPWRVYHLISVMILGRVIMQIIKEM 119 house mouse
XP_003640826  42 AAAALLGETGLAVGc----------cIAAALSWERPLHSLGGFVCANLLFWFVALTPWRVYHLTSLIILGLLVLQIIKDL 111 chicken
XP_007899905  57 PGPPAAGEWVPGCGrgsgpl-wlltrLESALTWRSPGYSVGLFICANAVFWFLALTPWRLYSLVALCFLLLAVLEKVKLL 135 elephant shark
XP_018124903   6 EGSHKVSEEEEQLPswrrtandmavsFRNILTWHRPVRSLVAFLCANCLFWFLALTPWRMYHLISLILLGVVMLQILHHV 85  African clawed ...
XP_018123183  55 AELQTMSEAEEGSHkvsv-----alnFLNILTWHRPVRSLVTFLCANCLFWFLALTPWRMYHLISLILLGVVMFQILQHF 129 African clawed ...
Q9H6L5       137 VLSRTRGAQLWRSLSESWEVINSkpderPRLSHCIAESWMNFSIFLQEMSLFKQQSPgKFCLLVCSVCTFFTILGSYIPG 216 human
XP_005993553  91 VLCRIRGAQLWRSLSASWEVVDVkpeskTGLSQCIAESWMNCSKFLQEMSHFKQQNPgKFCLLVCSLCTFSAVIGRYIPG 170 coelacanth
NP_001030022 137 VLSRTRGAQLWRSLSESWEVINSkpderPRLSHCIAESWMNFSIFLQEMSLFKQQSPgKFCLLVCSVCTFFTILGSYIPG 216 human
Q5E9K8       133 ILSRTRGAQLWRSLSESWEVINSkpderPGFSHCLAESWMNFSIFLQEMSVFKQQSPgKFCLLVCSVCTFFTILGSYIPG 212 cattle
Q8VE91       120 VLSRTRGAQLWRSLTESWEVINSkpderARLSQCIAESWMNFSMFLQEMSLFKQQSPgKFCLLVCSVCTFFTILGSYIPG 199 house mouse
NP_001030023 120 VLSRTRGAQLWRSLTESWEVINSkpderARLSQCIAESWMNFSMFLQEMSLFKQQSPgKFCLLVCSVCTFFTILGSYIPG 199 house mouse
XP_003640826 112 VLSRIKGAQLWRSITDNWEVISSrqdyrPRINQCLSEALMNLFVFLQEMSHFKEQNPgKFCLLVCSVCTFFTVLGSYIPG 191 chicken
XP_007899905 136 TLFIMKGWKSSRSLSESWKVTDDkpegmPRLNQYMTESWMSCTAFFEEMFHFKKQNPgKFCLLVCSLCTFCAVVGRYIPG 215 elephant shark
XP_018124903  86 ILSRSKGIHLWRKMSIRWEMMTSse-ckPRLGQCISESWSSYSAFLQELLHFKQQNPgKFCLLVCSVCFFFTIMGSYIPG 164 African clawed ...
XP_018123183 130 LLSRSRGAHLWRKISLRWEIMTS-----SECKPRLGQCILESWSSYSELLHFKQRNPgKFCLLVCSVCSFFTIMGSYIPE 204 African clawed ...
Q9H6L5       217 VILSYLLLLCAFLCPLFKCNDIGQKiyskIKSVLLKLDFGIGE 259 human
XP_005993553 171 AVLSYFILLCAFLCPLIKCNKLGQKvfgvLKPALQKLDFGIVD 213 coelacanth
NP_001030022 217 VILSYLLLLCAFLCPLFKCNDIGQKiyskIKSVLLKLDFGIGE 259 human
Q5E9K8       213 VILSYLLLLCAFLCPLFKCNDIGQKiyskIKSCLLKLDFGIRE 255 cattle
Q8VE91       200 VILSYLLLLFAFLCPLFKCNDIGQKiyskVKSILLKLDFGIGE 242 house mouse
NP_001030023 200 VILSYLLLLFAFLCPLFKCNDIGQKiyskVKSILLKLDFGIGE 242 house mouse
XP_003640826 192 VVLSYVLLLCAFLCPFLKCNEFGQKlcnkVKSVLMKLDFGIVE 234 chicken
XP_007899905 216 AVVSYCLLLCALLWPLVTSYDLGHRvysrIEPLLQRLDFGLKD 258 elephant shark
XP_018124903 165 VVLSYLLLLFAFLCPFLKCNEFGKRmcfkVKTVLQKLNLGFRA 207 African clawed frog
XP_018123183 205 VVLSYLLLLFAFLCPFLKCNEFGQIvcskVKTVLQKLNFGFQA 247 African clawed frog
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