1SIG


Conserved Protein Domain Family
Sigma70_ner

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pfam04546: Sigma70_ner 
Sigma-70, non-essential region
The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function.
Statistics
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PSSM-Id: 461348
Aligned: 171 rows
Threshold Bit Score: 61.8023
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1SIG_A          29 PEAITYLLEQYNRVEAEearlsdlitgfvdpnaeedla---------------------------------ptathvgse 75 
Q5NM13         159 piTFDNIIEWSNALNEGtlqlreiidldamltqgpspdqfeedgddndneise---rnagptfkedddedddsegelden 235 Zymomonas mob...
WP_025290204   163 pitfnaiidWSNALNEGtmqlreildldamlskdpapesltedgeeadgeisek-tagpsykeeedveeapaedddesmt 241 Sphingomonas ...
Q1GUH6         154 pltfnaiieWSNALNNGdmqlreivdleamlskdpapenldeegaedgeisektagvsfkdedeveeepaadgddedgeg 233 Sphingopyxis ...
WP_013836904   166 pltfhaiigWSEALNNGdmqlreildldamlskepqpenlgedgeadgeisaa--tagptfkedddsvednseevdedgn 243 Novosphingobi...
ELS:G432_00655 187 ldamlskgptaEQVESAededgeiseqstgpsfkeedepe----------------------------easadddedsmt 238
jgi:Swit_0431  161 pitfnaiieWSNALNEGtmqlreildldamlskgptaeqvenedadaeisaet--agptfkeeeepeeeasadededsmt 238
jgi:Selin_0173 162 PKAVESLQELAEKLEAGeiglkdiimlddevgsmg---------------------------------------iignst 202
Q2INW6         309 siAIREILELGERLRKGkirvreiikdagdeqqaeqeepe-----------------------------eeldeaveaae 359 Anaeromyxobac...
WP_016473780   319 PIAVEEILRLGEALKDEntavdtvvdgfndaa------------------------------------------------ 350 Sutterella wa...
1SIG_A          76 lsqedldddedEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRD------------TIKAK-GR-SHATAQEEIL 141
Q5NM13         236 gqriqrenmdeEDEN---TLSLAQMEEQLKPASLEKFAKIADLYRQFSVlqnar---mralGANEEfPEdQENAYQQLRE 309 Zymomonas mob...
WP_025290204   242 errakrpsddeEEDN---TLSLAQMEETLKPAALEKFATITSLYKKFTKlqaar---ievlGVGNDfGAaEEKKYQKLRE 315 Sphingomonas ...
Q1GUH6         234 tsgkresfdddDEDN---TLSLAAMEELLKPDALEKFANITKSFKAFQKlqear---lealSSGEEfPAaSEKKYHKLRE 307 Sphingopyxis ...
WP_013836904   244 pipkrrgeedeEDDN---ILSLGQMEAALKPEALAKFALITELFRTFERlqser---ldalALGIDfPGaKEDQYQQLRE 317 Novosphingobi...
ELS:G432_00655 239 errtprpteddDDDN---TLSLAQMEEQLKPMALEKFATITELYKKFHKmqvar---leamGAGGElPAaEEKKYQSLRE 312
jgi:Swit_0431  239 erraprpqeddDEDN---TLSLAQMEEQLKPMALERFAAITDLYKTFSQvqsar---vaalGVGDDfPAaEEERYQGLRE 312
jgi:Selin_0173 203 sydedeesaeeDAEDPSSAHVRAENATEMRDFVINSICDIGQQLLSLRE------------YKAKG----KKDKYRKTLE 266
Q2INW6         360 gqgeaeaeagaEGDGAAAAEGAEPEKPRIPKEEERKVEHVLKHIDRIRKlerdvakvretlQGGKKlSEvKRKELKGEVR 439 Anaeromyxobac...
WP_016473780   351 aeenanssadeiatdIGAAAMTVDQLAEMRARVLSLFELARKSLDRVRE------------TYGDPk---REKEYRKALA 415 Sutterella wa...
1SIG_A         142 KL----SEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLcVEQCKMPKKNFITLF-TGNETSDTWFNAAIAMNKP 216
Q5NM13         310 EL----TAEVESVKFHNARIEFLVEQLYNYNSRLRTLNGQMLRL-AERYKVPRDSFLNAY-LGNEMEEGWVERVSKIDKK 383 Zymomonas mob...
WP_025290204   316 DL----TAEVESVQFHGAKIEYLVDQLYSYNRRLTALGGQMLRL-AERHKVPRKDFLDRY-LDHELDEGWTAAVATIDKK 389 Sphingomonas ...
Q1GUH6         308 EL----TAQVESVQFHGTKIEYLVDQLYSYNRRLTALGGQMLRL-AERHKVPRKSFLDHY-VGRELEENWLEEVAGIDKK 381 Sphingopyxis ...
WP_013836904   318 DL----TAQVESVQFHATKIETLVDNLYAFNRRLTTLGGQMLRL-AERHKVKRADFLDAY-TGRELDDAWLTEMASTDKK 391 Novosphingobi...
ELS:G432_00655 313 DL----TAEVESVQFHGAKIEYLVDQLYSFNRRLMALGGQMLRL-AERHKVQRKSFLDAY-VGHETEEGWLDRVAGLDKK 386
jgi:Swit_0431  313 QL----TAEVESVQFHGAKIEYLVDQLYSFNRRLTTLGGQMLRL-AERHKVPRRDFLEAY-VNHEMEDGWLDRVGRIDKK 386
jgi:Selin_0173 267 SM----TAVISEIRLTNETISRISNMIKEQYLESRRAGSELAKI-IKVTGLSRDD-LQYL-CGEESSAEHVESARAKTSL 339
Q2INW6         440 AIeaemMENLEAIQLNKKQIDRIVLRLKSFIKRVEEAEREFFDC-ERRTGVPVKDLRRLL-RETREDEAERKKLAKKLRC 517 Anaeromyxobac...
WP_016473780   416 DM----SAALSPIRFSVKLVTQMTDHISQHMDEVNNTLKKMRATlANQCRMPQVQVVELLkSDGVTDPECFEKISAAGKP 491 Sutterella wa...
1SIG_A         217 WSEKLHDVSEEVHRALQKLQQI 238
Q5NM13         384 WANFTTSEAESIERIRSEVAEI 405 Zymomonas mobilis
WP_025290204   390 WGNFVAIEGAAVDRIRAEIGEI 411 Sphingomonas sanxanigenens
Q1GUH6         382 WAAFAENEAAAVDRIRVEISEI 403 Sphingopyxis alaskensis
WP_013836904   392 WASFAESEAEPAERIRLEVSDI 413 Novosphingobium sp. PP1Y
ELS:G432_00655 387 WAAFAAAEAAPVERIRAEIAEI 408
jgi:Swit_0431  387 WANFAANEADAVDRIRNEIGEI 408
jgi:Selin_0173 340 RAEDFERLLGKASESIASLREI 361
Q2INW6         518 ALDEVEELDRTLRSAGRKILRV 539 Anaeromyxobacter dehalogenans 2CP-C
WP_016473780   492 WSDAVSHSMAVLKEEQAVLISA 513 Sutterella wadsworthensis
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