2XYK,4UUR


Conserved Protein Domain Family
TrHb2_PhHbO-like_O

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cd14773: TrHb2_PhHbO-like_O 
Click on image for an interactive view with Cn3D
Truncated hemoglobins, group 2 (O); Pseudoalteromonas haloplanktis PhHbO like
The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. TrHbs are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). TrHb2's belonging to this group include Pseudoalteromonas haloplanktis PhHbO (encoded by the PSHAa0030 gene) which appears to be involved in oxidative and nitrosative stress resistance.
Statistics
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PSSM-Id: 381282
Aligned: 67 rows
Threshold Bit Score: 135.365
Created: 14-Dec-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heme binding
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:2XYK: Agrobacterium tumefaciens TrHb2 binds heme; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                     ###     #  ##  #          #        #  ##  #  #  
2XYK_A      9 YEAIGGDATVRALTRRFYELMDTLPeaarCRAIHPaDLSGSEAKFYDYLTGYLGGPpVYVEKHGHPMLRRRHFVAP-IGP 87  Agrobacterium tume...
EDM25126   15 YRGVGGDEGLKKLVAEFYRQMSSLKeaehIRKMHPdDLSESEDKLYCFLSGWMGGPrLYNEKYGSIAIPRAHTHLD-IDY 93  Lentisphaera arane...
EAT11681   15 YQAAGKFEGILKLVVAFYGYMDTLPeaqhIRAMHPkDLELSIDKLACFLSGWMGGPrLYREKYGVIAIPSAHSHLN-IGS 93  Oceanobacter sp. R...
EAW31083   20 FIAAGGEEGIRKLVDAFYDAMEVLPeakgILSMHKtDLIITRDKLASFLCGWLGGPkRYKEKYGTIHIPRAHAHLD-IGI 98  marine gamma prote...
EAQ65082   15 FQAVGGKEGLHALVSDFFHFMGTEPqfkrLYDMHPaDTELSIDKLYRFLTGWMGSDkLYSQKYGSIQLPRAHMHLD-VID 93  Marinomonas sp. ME...
EGG99484   19 FQAAGGQAGIRKLVDDFYDVMDQHTgadrIRKMHPrDLEESRDKLALFLCGWLGGPrLFREKYGPISIPQAHSHLR-IDA 97  gamma proteobacter...
CCK75142   21 FHAAGGFDGIKQLVDAFYNAMETLAqaqkIRAMHNpDLDESRDKLTRFLTGWLGGPkLFSEKYGPIRIPVAHRHLD-IGP 99  Oleispira antarcti...
EPJ53174   10 FLAAGGESGIFSLVEDFYRQMETLPqaklIRSMHPdDLTESIDKLARFLCAWLGGPkLYREKYGAISIPRAHQHLS-IST 88  Osedax symbiont Rs2
ABD24518   11 YDRIGGREVLRRITDRFYDLMDTDPayaeLRAMHApDLSPMREALAGFLSGWCGGPrGWFEANPGKCMMSMHKPFP-ITR 89  Novosphingobium ar...
BAK66394    8 FERLGSRAAIARLAERFYQIMDSDPayaeLRAMHGpDLVPMVASLTDFLVAWTGGPrDWFEQRPGACIMSMHVVLPgLAR 87  Sphingobium sp. SYK-6
Feature 1      ##  #                         #  ##  #  
2XYK_A     88 AERDEWLLCFRRAMDETi-ENAKLREIIWAPVERLAFHMQN 127 Agrobacterium tumefaciens str. C58
EDM25126   94 PEAEAWLLCMGKALNELa-YPDDFCEYLMTQLKVPAERIRM 133 Lentisphaera araneosa HTCC2155
EAT11681   94 AERDAWLMCMEKALADQd-YSTDLQGYLLKQLAVPAERCRN 133 Oceanobacter sp. RED65
EAW31083   99 EERDVWLKCMTVALEQQn-YAEAFKSYLLRELFTPAERSRT 138 marine gamma proteobacterium HTCC2143
EAQ65082   94 EDKQAWLDCMAMAMDSQg-LDADLKEYLLIQLAVPAERIRQ 133 Marinomonas sp. MED121
EGG99484   98 ADRDSWLMCMEEALKRQp-YAEDFKQYMLIQLAVPAERCRT 137 gamma proteobacterium IMCC2047
CCK75142  100 AERDAWLACMKIAVDAQp-YQQDFRDYLMAQLYVPAERSRN 139 Oleispira antarctica RB-8
EPJ53174   89 TERDAWLLCMQKALLNTd-YTDDFQQYLLRQLAVPANRCVN 128 Osedax symbiont Rs2
ABD24518   90 QTATQWADCMSRAIADAa-PEDTEVADAMAQVLGQMAKGMA 129 Novosphingobium aromaticivorans DSM 12444
BAK66394   88 TTATQWIDAMSRAMAETqpGDAQVRKLVLEALGRMCDGMAA 128 Sphingobium sp. SYK-6

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