2LEM


Conserved Protein Domain Family
Apolipoprotein

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pfam01442: Apolipoprotein (this model, PSSM-Id:396157 is obsolete and has been replaced by 460211)
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Apolipoprotein A1/A4/E domain
These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.
Statistics
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PSSM-Id: 396157
Aligned: 95 rows
Threshold Bit Score: 49.5718
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2LEM_A          49 WDTLGSTVSQLQERLGPL--TR--D-FWDNLEKETDWVRQEM------NKDLEEVKQKVQPYLDEFQKKWKEDVELYRQK 117  house mouse
Q92K98        1505 AAKVSETARQASDMLSTS--TRliEgKVDKLSDISSSTLSQIggivgrFEDHSKVLGQASDLLAAAQSNLVSTLEERQDA 1582 Sinorhizobiu...
XP_003721705   208 LDTATQQRAELEARVARL--AAdrDeARQQLAANAEELQQRLdtatqqRAELEARVARLAADRDEARQQLAANAEELQQR 285  Leishmania m...
jgi:Msil_3548 1206 LAALDAHLAEIGARLTSS--AD--I-SANALGARTEALSERL------ALAVGETLGSLTKHADDVNQRLNATVGETLLT 1274 Methylocella...
XP_001462780  1300 LATAAQQRAELEAQVARL--AAdrDeAREQLAANAEELQQRLvtatqqRAELEAQVARLAADRDEAREQLAANAEELQQR 1377 Leishmania i...
Q53WB7          57 FQGLEKRIQEVETKLESR--IQ--N-LEARLGRQIQETETRL------GTRIQEVEAKLEGRIQGVEAKLEGQIQGVENR 125  Thermus ther...
vbi:Avi_2239   946 IEQISDAASDADMRIELAlgNRmdT-IRAVYEESETRLSGTI------DAKLGALTETLGTADSRIEQAFGSKADQLRAV 1018 Agrobacteriu...
AEB13456       312 tgtWTEKIESLEQDLKES--SE--N-FDSRLEDAVAGLDNSL------AEKTGALEDKINESAGTFENEFADKIKELSDI 380  Treponema su...
WP_012592506   311 gaSLNAKGEEITNALSRG--RD--D-LIESLSNHGNDLVGRL------TQRGEAATADLAQASASVAQTLDQRLAEINAR 379  Methylocella...
WP_012592506   776 AGALAAQTQTLQERLAA---------AVDTASERSDEIARRI------ADSTRDQTETLASRTDELHAQLGATIDAVDAH 840  Methylocella...
2LEM_A         118 ASPQGAELQE------SARQ-KLQELQGRLSPVAEEFRDRMRTH------VDSLRTQLAPHSEQMRE---SLAQRLAELK 181  house mouse
Q92K98        1583 LRTLSVGLVQ------R-SE-EIERTMRALEGFVDGAFQRAEER------SGQVAGNLRSGIQSSFS---DVGRLLSNTE 1645 Sinorhizobiu...
XP_003721705   286 LDTATQQRAEleaqvaRLAA-DGDEARQQLAANAEELQQRLDTAtqqraeLEARVARLAADRDEARQ---QLAANAEELQ 361  Leishmania m...
jgi:Msil_3548 1275 LGAQTDRVNE------RLEA-TTQRSLGALASHTESLQTRLAST------LGETLGALSGYSDEMQD---RLQGIGSQSL 1338 Methylocella...
XP_001462780  1378 LATAAQQRAEleaqvaRLAA-DRDEAREQLAANAEELQQRLVTAaqqraeLEAQVARLAADRDEAREqkaMDAEELQVLR 1456 Leishmania i...
Q53WB7         126 LEARIHAVET------KLEG-KIQEVEARLEGRIQGVEAKLERQ------IQETETRLGTRIQEVEA---KLERQIQETE 189  Thermus ther...
vbi:Avi_2239  1019 YEEGQARLTQ------TLDS-KVDQLSDVAAEADMRIEFALGSK------VDSIRSVYEDSEARLAG---TIDAKLGQLI 1082 Agrobacteriu...
AEB13456       381 VENSTSRIED------ECSG-RISEIEEKLEQSSSGIQNKFSEK------LSQIESYFNETSNSIEA---GYKERADSLQ 444  Treponema su...
WP_012592506   380 LRDAQEALAA------DLGA-RGDSLSQRLAVVGAGIADTVSSR------GDSLAARLEETSGRLHE---VVAVQGGALG 443  Methylocella...
WP_012592506   841 LEEISRRLAVvsessvGALAeQTAALQDRLSAVARTVNEHAGEIsr--rlASSARDSVGTLAERTQA----LEQRIEAAL 914  Methylocella...
2LEM_A         182 SNPTLN-----EYHss---akSHLKSLGEKARP-------ALEDLRHSLM 216  house mouse
Q92K98        1646 QRATEAa---eALRdt---lvKASDEAAASVEG-------VFSQAEERSR 1682 Sinorhizobium meliloti
XP_003721705   362 QRLDTAtqqraELEaqlarlaADRDEARQQLAA-------NAEELQQRLD 404  Leishmania major strain Friedlin
jgi:Msil_3548 1339 AAFADHt---sGLEer---ltLMLGEAFNTLTI-------QASQLTENLS 1375 Methylocella silvestris BL2
XP_001462780  1457 EVVTQEr---dASEhrrlaleSEVERLRAERETmlkmlsmEAAESRHRGG 1503 Leishmania infantum JPCM5
Q53WB7         190 ARLGTRi---qEVEak---ldRQIQETEAQLEA-------RIHAVETKLE 226  Thermus thermophilus HB8
vbi:Avi_2239  1083 ETVGFAd---sRVQqa---lgSKADQIREAYEA-------NHGRLAEMLD 1119 Agrobacterium vitis S4
AEB13456       445 NELENKf---sSLLet---ftKQAKIFEDKTSV-------FEDNVKQKSD 481  Treponema succinifaciens DSM 2489
WP_012592506   444 DHLAEAg---eRFSrm---iaERVSSARETLDQ-------SGQSLVALFE 480  Methylocella silvestris
WP_012592506   915 SLLNEKs---dAIGer---laSTAEQSADAVAG-------QSEALRERLG 951  Methylocella silvestris
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