4IYB,4J2S,4ION,4IZX,3NBC,3NBD,3NBE


Conserved Protein Domain Family
beta-trefoil_Ricin_MPL_CNL

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cd23422: beta-trefoil_Ricin_MPL_CNL 
ricin B-type lectin domain, beta-trefoil fold, found in Macrolepiota procera ricin B-like lectin (MPL), Clitocybe nebularis lectin (CNL), and similar proteins
MPL and CNL are a homodimeric ricin B-like lectins with a beta-trefoil fold that is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Their alpha subunit may harbor a sugar-binding pocket. MPL has the highest specificity for terminal N-acetyllactosamine and other beta-galactosides. CNL induces maturation and activation of dendritic cells via the toll-like receptor 4 pathway. It is specific for terminal, non-reducing N-acetylgalactosamine (Gal-NAc)-containing carbohydrates including N,N'-diacetyllactosediamine/LDN (GalNAcbeta1-4GlcNAc, LacdiNAc). It is also specific for carbohydrates containing N-acetylglucosamine (-GlcNAc) or N-acetyllactosamine (-Galbeta1-4GlcNAc) at the reducing end.
Statistics
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PSSM-Id: 467300
Aligned: 47 rows
Threshold Bit Score: 91.9964
Created: 3-Jun-2021
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:sugar binding site [chemical binding site]
Evidence:
  • Comment:sugar binding pocket within alpha subdomain
  • Structure:4IYB; Macrolepiota procera ricin B-like lectin (MPL) in complex with galactose,contacts at 4A
  • Structure:4J2S; Macrolepiota procera ricin B-like lectin (MPL) in complex with Di-LacNAc, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      ####              # #          ##                              
4IYB_A      6 SGQTYKITNVk-aGTVIDLSGed--------nKSIIGYPYhs----gkNQQWTFNWT--GKAWTLRSas-----sGSYLG 65  parasol mushroom
3NBD_A      3 TPGTYNITNVaytNRLIDLTGsnp-----aenTLIIGHHLnktpsgygNQQWTLVQLphTTIYTMQAvn-----pQSYVR 72  Clitocybe nebularis
3NBE_A      3 TPGTYNITNVaytNRLIDLTGsnp-----aenTLIIGHHLnktpsgygNQQWTLVQLphTTIYTMQAvn-----pQSYVR 72  Clitocybe nebularis
TFK32047  562 LVGTHVIRNVm-nNGLLDLGSp---------vNHAAGNLTng----nkSQQWNIARSsdGKGYTIQNsq-----sGSYLS 622 Crucibulum laeve
PCH40051   12 SAGIYYIINLh-sKTALEVIDtpeg---dlrvETASLYKKssq--qyiDDQWKLIPA--GRGYIIQSmkss-sngLLYMT 82  Wolfiporia cocos M...
PSR76916   36 TQGVYSLINAh-sGMAMTPPAnn--------nGTVFGSPMhv----geKQQWRFVSL--GGGWIIQSvs-----sGEYLT 95  Phlebia centrifuga
RPD69985   77 APGTYVLLNAr-gGTAVDMSGad--------nKTVFGYPMhg----gpNQQWEFIPT--GHGYIIRCvrrsaeghSLYLT 141 Lentinus tigrinus ...
TFK32047  344 VQGVYKLRNVa-sGTLVTLPPapkg---ndegPNLVANEDaktddeslYQQWIFTYEpkSQTYFIENmk-----tGTYIT 414 Crucibulum laeve
TFK32047  175 PSGTYRIRNLt-tKNLLTLQKtankartsydgVCVVGHPEtig---deYQQWTIKSTasSRTFYIQNva-----tKQYIR 245 Crucibulum laeve
PVF98976    5 VAGYYNIVNIa-qNQYLALGNeaql---kdqtPLTCKSPLge-----qSQHWKLVYL--EGTSILVMkdd---ktKLYCR 70  Serendipita vermif...
Feature 1                                                                                     
4IYB_A     66 IEGtp-adGTRLVAVNdPFEWHIWRDea---neNAFRIFVPFtNYNLDLSGYGdt-tPGTPVQLWWTWe---gLHQTWTI 137 parasol mushroom
3NBD_A     73 VRDdnlvdGAALVGSQqPTPVSIESAgn----sGQFRIKIPNlGLALTLPSDA----NSTPIVLGEVDet--sTNQLWAF 142 Clitocybe nebularis
3NBE_A     73 VRDdnlvdGAALVGSQqPTPVSIESAgn----sGQFRIKIPNlGLALTLPSDA----NSTPIVLGEVDet--sTNQLWAF 142 Clitocybe nebularis
TFK32047  623 PPSdakayDTVPLTSS-PGVWNVERIpg----eNSFRILIPGtNLAIDLPEDGt--vANSKVQLWTRQe---aNHQKWII 692 Crucibulum laeve
PCH40051   83 MQTvg--dNEKVIVTPyLTVWDIQHDtst-dypDIVRFHWPTtKYVLQTVEKPs---PEREVLVRGFVps--rWRQKWRL 154 Wolfiporia cocos M...
PSR76916   96 LEEai-gdGTTLSTSSfPVTWKVDAYee---nvLSMRILRPNgNYALQLTSGGisllNEVQIAPCRPNe----PRQAWLV 167 Phlebia centrifuga
RPD69985  142 TDGsv-khGAAIVASPyPVAWNVEQTe------DGIRISWPNsEFSFDLADWGnn-aAGTKIQLAHRRn---ePCQLWHY 210 Lentinus tigrinus ...
TFK32047  415 SAYle-sgGYVLQGGDkPQLWDVRQTeydgqpeTQLLIKLPAiHWTMNVWYGAk--tAGTRVGLWPREsvptqTRERFIF 491 Crucibulum laeve
TFK32047  246 SVKps-aaWARLVPGDvPQHWDIRQAeydnptrGLYVIHMPEtNRVITLANNDa--kPDSFTCIWDRSyp-vlPQERWAF 321 Crucibulum laeve
PVF98976   71 VKDsktepSVLLVSSAkKSPFWLQSHp-----sGYYRIKVPNrNLAVTLSEDS----CGPKVNLSEGQe---aKEQLWKF 138 Serendipita vermif...
Feature 1        
4IYB_A    138 DRP 140 parasol mushroom
3NBD_A    143 ESV 145 Clitocybe nebularis
3NBE_A    143 ESV 145 Clitocybe nebularis
TFK32047  693 TGP 695 Crucibulum laeve
PCH40051  155 TRC 157 Wolfiporia cocos MD-104 SS10
PSR76916  168 IEH 170 Phlebia centrifuga
RPD69985  211 TRC 213 Lentinus tigrinus ALCF2SS1-7
TFK32047  492 EPV 494 Crucibulum laeve
TFK32047  322 EPI 324 Crucibulum laeve
PVF98976  139 VFL 141 Serendipita vermifera 'subsp. bescii'

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