3LV9,3HF7,3I8N,3JTF,3LFR,3LHH,3NQR,3OCM,3OCO,3OI8,4HG0,4IY0,4IY2,4IY3,4IY4,4IYS,5K25,5K22,4P1G,5K24


Conserved Protein Domain Family
CBS_pair_CorC_HlyC_assoc

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cd04590: CBS_pair_CorC_HlyC_assoc 
Click on image for an interactive view with Cn3D
Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains the majority of which are associated with the CorC_HlyC domain
This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains the majority of which are associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. These CBS domains are found in highly conserved proteins that either have unknown function or are puported to be hemolysins, exotoxins involved in lysis of red blood cells in vitro. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).
Statistics
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PSSM-Id: 341366
Aligned: 190 rows
Threshold Bit Score: 79.8473
Created: 25-Oct-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 41 residues -Click on image for an interactive view with Cn3D
Feature 1:CBS repeat [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #########   #########     ######     ######  ######         #####       
3LV9_A     24 KIREIXVPRTDXVCIYESDSEEKILAILKEegVTRYPVCRkn-kdDILGFVHiRDLYNQkine-nkieLEEILRDIIYIS 101 Clostridium diffic...
3OCM_A     37 SIRSIXTPRTDVSWVNIDDDAATIRQQLTAapHSFFPVCRgs-ldEVVGIGRaKDLVADlite--grvRRNRLRDPIIVH 113 Bordetella paraper...
NP_624578 219 TLHEVMVPRADAVFVRKDATAAEAVTLIARhgHSNYPVLGdh-pdDVAGVLGvRELMGLpagqftattAGAAARRPLLLP 297 Streptomyces coeli...
NP_695804 185 IVAEVMRPRADVVFIEGDQPLAEAAAFVRDqpYSRYPVTGkd-fdDVIGFVHvRDLLDVrdpn--akiVRDVVREGISLP 261 Bifidobacterium lo...
ABM10303  215 RGHDAMTPRTRIVAVAPDQSVQEMLDIAAAtgHSRFPVMEpg-shHVRGIVHiRRGLAVpfgyrgdlaVGEIMDEPTLIP 293 Arthrobacter aures...
ABP47445  210 ALREIVVPRPRVFRLRADLPVPQALHALAAsgHTRAPVVPageldDAIGVVHlRDLLGSag------tVADVARPALLLP 283 Mycobacterium gilv...
ABV96659   60 LVREVMMPRTEVVFLSAALTAPEAERLVRVetHTRYPVVDgt-hdDVVGFVHlHDVLLRpdkv-ppatVGELAREVKRVP 137 Salinispora arenic...
ABV97269  216 TAGEAMVPRVDVHTVRAHEPVSRVVELLETg-RSRFPVQGaegvdDVIGVTGiADVLGVplerrattpVGTVAVPPLLVP 294 Salinispora arenic...
BAI64544  215 TASEVMTPRGQVAMLEDTAPVAEVIKLARStgHSRFPLYKgd-hdNIVGVVHvKKAVGVppevretleAGALAEDVLQVP 293 Rothia mucilaginos...
BAJ28865  213 QLREVMVPRTEVTFLDGDRPVAEVRHETDSapHSRYPVVEgs-ydAVTGFVHvRDLYGAsger--vvrVRELARPVKLLP 289 Kitasatospora seta...
Feature 1                                             
3LV9_A    102 eNLTIDKALERIRkeKLQLAIVVDEyGGTSGVVTIEDILE 141 Clostridium difficile 630
3OCM_A    114 eSIGILRLXDTLKrsRGQLVLVADEfGAIEGLVTPIDVFE 153 Bordetella parapertussis
NP_624578 298 dTLPLPDAVERMRedDDEFAVVLDEhGGVAGVVTYEDIAE 337 Streptomyces coelicolor A3(2)
NP_695804 262 gTSKLLPSLELLRkrGIHLAVVIDEyGGTDGIVTLEDMTE 301 Bifidobacterium longum NCC2705
ABM10303  294 dTVELDDLMDTLRagGLQMAVLIDEtGDVAGLITLEDLVE 333 Arthrobacter aurescens TC1
ABP47445  284 dSLRVTAALSRLMdeHEQFALVIGErGGVSGIVALEDLLE 323 Mycobacterium gilvum PYR-GCK
ABV96659  138 gSKRVLAALTEMRreGHHLAVVIDEyGGTAGIVTCEDLIE 177 Salinispora arenicola CNS-205
ABV97269  295 eTLPLPTVLDRLRssHRQLACVVDEyGGFAGVITLEDIAE 334 Salinispora arenicola CNS-205
BAI64544  294 eTLHLDALLTQLRqgALQLAVVLDEyGGTAGIATLEDLVE 333 Rothia mucilaginosa DY-18
BAJ28865  290 aTKRVLEAMSEMRreGHHLAIVVDEyGGTAGIVTLEDLVE 329 Kitasatospora setae KM-6054

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