2IC1,2B5H,4WVZ,4YNI,4QMA,4QM9,3ELN


Conserved Protein Domain Family
cupin_CDO

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cd10548: cupin_CDO 
cysteine dioxygenase, cupin domain
This family contains cysteine dioxygenase (CDO; EC 1.13.11.20), which catalyzes the conversion of cysteine to cysteine sulfinic acid, the first step in the biosynthesis of essential oxidized cysteine metabolites such as sulfate, hypotaurine, and taurine. CDO also plays an important role in the regulation of intracellular cysteine levels in mammals; CDO expression is altered in cancer cells, and abnormal or deficient CDO activity has been linked to Parkinson's disease, Alzheimer's disease, and rheumatoid arthritis. CDO is an iron-dependent thiol dioxygenase that uses molecular oxygen to oxidize the sulfhydryl group of cysteine to generate cysteine sulfinic acid. The CDO active site contains an amino acid-derived cofactor. These enzymes are found in prokaryotes as well as eukaryotes and belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.
Statistics
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PSSM-Id: 380416
Aligned: 247 rows
Threshold Bit Score: 70.0219
Created: 20-Feb-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
metal bindingactive site
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:H H HClick to see conserved feature residue pattern help
Evidence:
  • Comment:The four-coordinate metallocenter usually includes three histidines and one glutamate; however, this protein may bind metal via only three amino acids
  • Structure:2B5H: Rattus norvegicus cysteine dioxygenase binds iron; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                  # #                                                
2IC1_A     63 YTRNLVDQGng-kfNLMILCWGeGHGSSIHDHtnsHCFLKMLqGNLKETLFAWpdkksn----emvkkSERVLRe----- 132 human
2B5H_A     58 YTRNLVDQGng-kfNLMILCWGeGHGSSIHDHtdsHCFLKLLqGNLKETLFDWpdkksn----emikkSERTLRe----- 127 Norway rat
PCJ52202   63 YARRLLHHDskgaySIVVMVWGaDQGTPLHDHsgtWCVECVTqGSIKVTNFKReanrdseagildfseQQSQMAg----- 137 Planctomycetes bac...
PYQ13983   61 YARHLFYQDpedgfVLVAMVWGpGQCTGIHDHagvWCVEGVYeGNIQVTRFDPvg------------eVGETVRfspgea 128 Acidobacteria bact...
PCI39730  118 YARRLLYKDpndrySVVVMVWGvGQVTALHDHagnWCVEGVYrGRIKVVNYELknd----------geKDGVYKfrknqe 187 Elusimicrobia bact...
KRG60497   48 YARHELYCSrehgyCVVAMVWApGQATPLHDHdgsWCVEAVWsGQLEVTHWHLlqadddt--gwrfaqGARQHQr----- 120 Stenotrophomonas k...
PZQ19586   82 YSRHQLVAEpdigySCLLIQWPaGHATPLHDHdglWGIELVLdGALQVEEFRKdespg-----sdglaHARTLVlg---- 152 Rhodanobacter sp. ...
PZQ17445  226 YARRELYRSatrgyCVVAMTWApGQGTPLHDHdglWGVVAVWrGRLAITDYTPvrsdgd----rawftPSPVLTgt---- 297 Rhodanobacter sp. ...
ODU35310   78 YRRIELHHCpvqgfQILALVWGpGQGTPVHDHrelWGIESVWqGELDVIDFAVke------------tAGSLLRlepsqv 145 Xanthomonadaceae b...
RAN77195   58 FERWLLAERqkpaiSVLVMAWPpNHRTPVHDHaglWGLEMTLhGALEVQSYSRd-------------pVSGDLRmqgtd- 123 Bacillus sp. SRB_336
Feature 1                       #                     
2IC1_A    133 -----NQCAYINd-sIGLHRVENishtePAVSLHLYSPPF 166 human
2B5H_A    128 -----NQCAYINd-sIGLHRVENvshtePAVSLHLYSPPF 161 Norway rat
PCJ52202  138 ----vGEAGKLIp-pFEYHIIHNpc-peTAVTVHVYGGEI 171 Planctomycetes bacterium
PYQ13983  129 iragvGACGALIp-pVEYHQITNdt-pgTAISVHVYGRDL 166 Acidobacteria bacterium
PCI39730  188 ltglfGEAGALIp-pYEYHTIANddpkqPSVTVHVYRGEM 226 Elusimicrobia bacterium
KRG60497  121 ----aGDCSGLLa-sAPYHSVRNpdpqaVAVSIHVYQHRL 155 Stenotrophomonas koreensis
PZQ19586  153 ----vGDAAAFAd-pRYVHRCRNlsarkPALSLHVYGGLL 187 Rhodanobacter sp. 2APBS1
PZQ17445  298 ----pGAVGGVVp-pAEYHVIANrserePAVSVHVYQRAA 332 Rhodanobacter sp. 2APBS1
ODU35310  146 sripaGQSLGFTp-eHGLHLCRNsaprdVTISVHVYARAL 184 Xanthomonadaceae bacterium SCN 69-320
RAN77195  124 -wlgpGDGTWFEgdqNHVHRCRNlsrhdTALTLHVYGGEL 162 Bacillus sp. SRB_336

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