3V5Q


Conserved Protein Domain Family
PTKc_TrkC

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cd05094: PTKc_TrkC 
Click on image for an interactive view with Cn3D
Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C
PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a receptor PTK (RTK) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. The TrkC subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270676
Aligned: 4 rows
Threshold Bit Score: 568.488
Created: 29-Jun-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:3V5Q: Human TrkC binds inhibitor; contacts at 4A.
  • Comment:also based on the structures of other PTK family members bound to ATP analogs.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    ## ##   #                 # #                                       
3V5Q_A        11 HIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD 90  human
CAG03103      69 HIKRRDIILKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKTLKDPNLSARKDFQREAELLTNLQHDHIVKFYGVCVDGD 148 Tetraodon nigro...
Q91044       534 HIKRRDIVLKRELGEGAFGKVFLAECYNLSPTNDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD 613 chicken
XP_002932277 533 YIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKTLKDPTLAARKDFQREAELLTNLQHDHIVKFYGVCGDGD 612 western clawed ...
Feature 1             ####  ##                                                          ## #     
3V5Q_A        91 PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANL 170 human
CAG03103     149 PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPLQSNGELGLSQMLHIATQIASGMVYLASQHFVHRDLATRNCLVGNGL 228 Tetraodon nigro...
Q91044       614 PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANL 693 chicken
XP_002932277 613 PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQTKGDLGLSQMLHIATQIASGMVYLASQHFVHRDLATRNCLVGANL 692 western clawed ...
Feature 1             #                                                                          
3V5Q_A       171 LVKIGDFGMSRDVYSTDYYRVG-------GHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS--- 240 human
CAG03103     229 LVKIGDFGMSRDIYSSDYYRVGvwapyvgGHTMLPIRWMPPESIMYRKFSTESDVWSFGVILWEIFTYGKQPWFQLGnne 308 Tetraodon nigro...
Q91044       694 LVKIGDFGMSRDVYSTDYYRVG-------GHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS--- 763 chicken
XP_002932277 693 LVKIGDFGMSRDVYSTDYYRVG-------GHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS--- 762 western clawed ...
Feature 1                                                                                        
3V5Q_A       241 --------------------------------------------------NTEVIECITQGRVLERPRVCPKEVYDVMLG 270 human
CAG03103     309 vrkeadgervpaaadphpelphipaadpspirltppirpsglllwehgarPSLVIECITQGRVLERPRICPKEVYDIMLG 388 Tetraodon nigro...
Q91044       764 --------------------------------------------------NTEVIECITQGRVLERPRVCPKEVYDIMLG 793 chicken
XP_002932277 763 --------------------------------------------------NTEVIECITQGRVLERPRVAPKEVYDIMLG 792 western clawed ...
Feature 1                                   
3V5Q_A       271 CWQREPQQRLNIKEIYKILHALGKATP 297 human
CAG03103     389 CWQREPQQRLNIKDIQKVLFAMGKATP 415 Tetraodon nigroviridis
Q91044       794 CWQREPQQRLNIKEIYKILHALGKATP 820 chicken
XP_002932277 793 CWQREPQLRLNIKEICKILQALGKASP 819 western clawed frog

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