4LFU,2UV0,3QP8


Conserved Protein Domain Family
Autoind_bind
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pfam03472: Autoind_bind 
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Autoinducer binding domain
This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules (N-Acyl homoserine lactones, chlorolactone and rosmarinic acid) (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Links
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Statistics
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PSSM-Id: 427319
Aligned: 79 rows
Threshold Bit Score: 70.4702
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
4LFU_A         25 EVYHEIELQAQQLEYDYYSLCv----rHPVPFTRPKVAFYT-NYPEAWVSYYQAKNFLAIDPVLNPENFSQG-HLMWNDD 98  Escherichia co...
Q7N9K5         22 FVAEICELINKISGFSLFSLLl----kARFPISNREVYFFN-NYHESWRDLYIEKKYWMIDPVLNFRPVPPSfSKIWDLD 96  Photorhabdus l...
jgi:Mpe_A3796  17 EFRGEVVRFAKRLGFETVSAIt----vVDHPVGDTEFVAID-NAPDAYKDAIEDPKAGQLDPVMQHCKRQSV-PIIWDQS 90 
Q63MI1         49 fdvadcDARLRAAGFTTLCYGa----fELIGQQMLAAYLLRdFAPASFLRAYVEGRLFEVDPRFAEWRQGVS-PIAWRLD 123 Burkholderia p...
Q63MI2         70 ECGRIATSLLRLMGFATFAYFa----lEFTRDDAECLYLHEaFTPAAYRGDYVRRRHHDVDPRMLGTRASSM-PVVWDLR 144 Burkholderia p...
WP_012178222   25 EAWALHCTRMAEYGFDRLFYGhtrfstPSTYADRHDALILS-SLPQGYVERYLREGHYRNIPMIRWAEKNDG-ACSWSEV 102 Dinoroseobacte...
Q28PZ4         15 DLWSHHTKTLASYGFDRVFYGfnafrgAGLYDNPEDALLLT-NMPTDYVEAYVDGGMFRDGVMMRWATENVG-AASWRDV 92  Jannaschia sp....
WP_013067547   16 TIWSMHCAQMAKFGFDRLIYGftrfraTQNLGSLDDTLILS-NHDPAYLNSFLGAGLFSEAPMVKWALDSVG-ACSWRVV 93  Rhodobacter ca...
Q1GHC1         18 ELWRAHVQQMSRYGFDRLLYGytlfktRTSLGDPDDFVILT-NHCPEYLQGFLADGLYAHAPMLTWALENEG-HASWRVS 95  Ruegeria sp. T...
Q5LRZ6         16 ELWDGHTRQMAEYGFDRLLYGytnyrtATSLGDPEDFVILT-NHDQSYIDGFMQEGLYFHAPMLHWALEHEG-AGSWRMI 93  Ruegeria pomeroyi

4LFU_A         99 LFSeAQ---------PLWEAARAHGLRRGVTQYLMLPNRAL-GFLSF--SRCSAREIPILSDE--LQLKMQLLVRESLMA 164 Escherichia co...
Q7N9K5         97 FFSksn-------gqELWYVNQKYGFRSGITFGLPAFSGTY-GIFSV--AGKDGPIDNETMYK--CSGEILGVYIRIIRY 164 Photorhabdus l...
jgi:Mpe_A3796  91 TYVsag-------qgSMWEAQARFGFRTGICLALHMPEGRH----FVigVDRDQALPKDRGEVtrLVADLQLFAVHAQDT 159
Q63MI1        124 ELDaHArrtgerrmhALVNSLRAHAMHSGVIFCWPVPHLDLrVAVSL--ASEAHDGSLDDR----VIGCALALSLDVHRA 197 Burkholderia p...
Q63MI2        145 QLArEHaargcdaldGFLRVMHDDDMCSGVMYSMPVPGTRVhAFASF--TAPRRSRDWISSA---TLEQVLSLGLSVHRF 219 Burkholderia p...
WP_012178222  103 YARlHPdemt-pgtrKALGTRQAFGIENGYSISFRNLCQGGfAAISLv-GREGLSQADLDKIWasRGAEIELANRVFHLV 180 Dinoroseobacte...
Q28PZ4         93 YMAmANdaps-kgelAMRAMNEKHDITAGYTISFPMAIKNAnAGIGMa-VKKGMGQDEADAIWreHGEDIETICHVAHLC 170 Jannaschia sp....
WP_013067547   94 AERmAAgelt-egerRVIDLNRRFQVLAGYSIGFPDTSARAkGAIGLc-AQPGLTQADVDAIWeeHGRDLRVLNSIMHLK 171 Rhodobacter ca...
Q1GHC1         96 QEMaAQglld-kqarKVQDFNQSMGVHAGYTISFNSASERFkGAISLa-ARADLDQDGIDQIWaeHGADIVLMNNVAHLK 173 Ruegeria sp. T...
Q5LRZ6         94 SDMlDSetlt-pqerRVYAFNAEHGVTAGYTVSFTSVSARTkGAISLc-ARKGMSQDEVDALWrtHGQDILLMNNVAHLK 171 Ruegeria pomeroyi

4LFU_A        165 L 165 Escherichia coli K-12
Q7N9K5        165 L 165 Photorhabdus laumondii subsp. laumondii
jgi:Mpe_A3796 160 A 160
Q63MI1        198 a 198 Burkholderia pseudomallei
Q63MI2        220 a 220 Burkholderia pseudomallei
WP_012178222  181 V 181 Dinoroseobacter shibae
Q28PZ4        171 I 171 Jannaschia sp. CCS1
WP_013067547  172 I 172 Rhodobacter capsulatus
Q1GHC1        174 I 174 Ruegeria sp. TM1040
Q5LRZ6        172 I 172 Ruegeria pomeroyi
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