1PZN,4DC9,1XU4,2ZUB,2DFL,2BKE,2GDJ,1T4G,2F1H,3NTU,3ETL,4A6P,4B2I,5J4H,5JEE,5LBI,5L8V,5JEC,5JED,5LB4,5KDD


Conserved Protein Domain Family
archRadA

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cd19515: archRadA 
Click on image for an interactive view with Cn3D
archaeal recombinase Rad51/RadA
This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Statistics
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PSSM-Id: 410923
Aligned: 32 rows
Threshold Bit Score: 404.823
Created: 16-May-2012
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindinghexamer
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:1XU4; Methanococcus voltae RadA with bound ATP, contacts at 4A
  • Comment:contains the Walker A and Walker B motifs

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                #######                                     #      # 
1PZN_A    113 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVXVQlppee----------gglnGSVIWIDTENTFRPERI 182 Pyrococcus furiosus
4DC9_A     24 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQnpeflfydeeavskgevaqPKAVYIDTEGTFRPERI 103 Methanococcus voltae
1XU4_A     80 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQnpeflfydeeavskgevaqPKAVYIDTEGTFRPERI 159 Methanococcus voltae
2GDJ_A     22 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQnpeflfydeeavskgevaqPKAVYIDTEGTFRPERI 101 Methanococcus voltae
1T4G_A     80 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQnpeflfydeeavskgevaqPKAVYIDTEGTFRPERI 159 Methanococcus voltae
2F1H_A     80 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQnpeflfydeeavskgevaqPKAVYIDTDGTFRPERI 159 Methanococcus voltae
3NTU_A     77 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQnpeflfydeeavskgevaqPKAVYIDTEGTFRPERI 156 Methanococcus volt...
3ETL_A     80 LSTGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVNLQmrekifadlegvveeeleaPKAVYIDTEGTFRPERV 159 Methanococcus mari...
ABZ07424   87 ITTGTECLDLLLEGGLETQALTEVYGEFGSGKTQFCHTMCVTVQkpkee----------ggleGTVLYIDTENTFRPERI 156 uncultured marine ...
A5UMW0     79 ISVGSEGFNDLIGGGIETQSITEVFGEFGSGKSQISHELAVTVQlppek----------ggldGECVFIDTENTFRPERI 148 Methanobrevibacter...
Feature 1                                                                                     
1PZN_A    183 REIAQnrgldPDEVLKHIYVARAFNSNHQXLLVQQAEDKIKellntdrPVKLLIVDSLTSHFRSEYIGRGALAERQQKLA 262 Pyrococcus furiosus
4DC9_A    104 MQMAEhagidGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQeg----nNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLG 179 Methanococcus voltae
1XU4_A    160 MQMAEhagidGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQeg----nNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLG 235 Methanococcus voltae
2GDJ_A    102 MQMAEhagidGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQeg----nNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLG 177 Methanococcus voltae
1T4G_A    160 MQMAEhagidGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQeg----nNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLG 235 Methanococcus voltae
2F1H_A    160 MQMAEhagidGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQeg----nNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLG 235 Methanococcus voltae
3NTU_A    157 MQMAEhagidGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQeg----nNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLG 232 Methanococcus volt...
3ETL_A    160 VQMAEgagidGQTVLDNTFVARAYNSDMQMLFAEKIEDLIKgg----nNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLG 235 Methanococcus mari...
ABZ07424  157 VSIAKihgmdPEKVLDRIIVARAYNSAHQTLILEEASQMIKe-----nNVKLLIVDSAVGLFRAEYLGRGTLAIRQQRLN 231 uncultured marine ...
A5UMW0    149 EQIANgfeldIDEVLQKIHVARAFNSSHQILMAEKINELIQqg----nNIKLVIVDSLMAHFRAEYVGRESLAVRQQKLN 224 Methanobrevibacter...
Feature 1                                                                 #                  #
1PZN_A    263 KHLADLHRLANLYdIAVFVTNQVqarpdaffgdptRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLpEGEAVFSI 342 Pyrococcus furiosus
4DC9_A    180 RHMATLNKLADLFnCVVLVTNQVsakpdaffgmaeQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLpDAEAIFRI 259 Methanococcus voltae
1XU4_A    236 RHMATLNKLADLFnCVVLVTNQVsakpdaffgmaeQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLpDAEAIFRI 315 Methanococcus voltae
2GDJ_A    178 RHMATLNKLADLFnCVVLVTNQVsakpdaffgmaeQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLpDAEAIFRI 257 Methanococcus voltae
1T4G_A    236 RHMATLNKLADLFnCVVLVTNQVsakpdaffgmaeQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLpDAEAIFRI 315 Methanococcus voltae
2F1H_A    236 RHMATLNKLADLFnCVVLVTNQVsakpdaffgmaeQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHLpDAEAIFRI 315 Methanococcus voltae
3NTU_A    233 RHMATLNKLADLFnCVVLVTNQVsakpdaffgmaeQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYKSPHLpDAEAIFRI 312 Methanococcus volt...
3ETL_A    236 RHMATLNKLADLYnCIVLVTNQVaakpdayfgvaeQAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHLpDSEAVFRI 315 Methanococcus mari...
ABZ07424  232 KFVHLLVRIAEVYnCAALATNQVmaspdv-ffgdpTRPIGGNVVAHTSTYRIYFKKSGKKRIARMVDSPHHpEQEVIFAL 310 uncultured marine ...
A5UMW0    225 QHLHALQQIANTYnVAVFITNQVqakpdsffgsptKAIGGHVLGHASTYRIWLKKGLAGKRIARLVDSPHLpEGECVFKI 304 Methanobrevibacter...
Feature 1     ##     
1PZN_A    343 TEKGIED 349 Pyrococcus furiosus
4DC9_A    260 TEKGIQD 266 Methanococcus voltae
1XU4_A    316 TEKGIQD 322 Methanococcus voltae
2GDJ_A    258 TEKGIQD 264 Methanococcus voltae
1T4G_A    316 TEKGIQD 322 Methanococcus voltae
2F1H_A    316 TEKGIQD 322 Methanococcus voltae
3NTU_A    313 TEKGIQD 319 Methanococcus voltae PS
3ETL_A    316 TEKGIQD 322 Methanococcus maripaludis
ABZ07424  311 GEAGVID 317 uncultured marine crenarchaeote HF4000_ANIW133O4
A5UMW0    305 KTEGIVD 311 Methanobrevibacter smithii ATCC 35061

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