Conserved Protein Domain Family
PBP2_OsmF

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cd13616: PBP2_OsmF 
Substrate-binding domain OsmF of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold
Osmoprotectant binding lipoprotein OsmF of an ABC transporter (YehZYXW) from Escherichia coli is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. OsmF belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270334
Aligned: 15 rows
Threshold Bit Score: 400.554
Created: 22-Feb-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the osmoregulatory transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                                              ##  #                    
P33362     26 PVKVGSKiDTEGALLGNIILQVLEShgvPTVNKVQLGttpVVRGAITSGELDIYPEYTGNGAFFFkdenda----awkna 101 Escherichia coli 1...
NP_904062  26 AVRVGSKiDTEGALLGNLIQQVLEAhgvKTEGRLSLGntkVVRTAIAAGEIDIYPEYTGNGAFFFsdeknp----awksa 101 Chromobacterium vi...
NP_108513  38 QVVVSSKiDTEGGVLGNIIQLVLNAnniKTSDRIQLGgtpVVRKAITAGEIDIYPEYTGNAAFFFekaddp----vwkda 113 Mesorhizobium loti...
ADI14693   22 PVTIGSKvDTEGSVLAQIMRLMLESngiEVVDRSGFGttsVVREALLAGEIDMYPEYTGTALTFFpdaglde--dlatrp 99  Truepera radiovict...
ACK51078   28 PVVVSSKlDLEGALLGEMMLIALRRagvPAVANLQIGptaILRQALISGAVDLCVEYTGNAAFFFhreddp----vwrda 103 Methylocella silve...
NP_285459  90 TVTVGSKiDTEGALLCQITKQALERggfKVNDKCSTGatnVVRKALLQGEIDLYPEYTGSAIYLLteagqkidpkvsrda 169 Deinococcus radiod...
AEA33713   26 PIIVSSKiDTEGALLGNMIYYALKYnglNVKNKTGLGatnILRRAIKSGEIDIYPEYTGNGAYFFpyldkt----ifknf 101 Hippea maritima DS...
ADV66694   20 PIVVASKlDPEAQLLGQMILLTLRDaglDVTDKTGLGdtgVARKAILSGEIDVYPEYTGNAVYLFpdakinl--assrnp 97  Deinococcus marico...
ADJ26211   36 RVTVGSKiDTEGGLLGQIIVLLLQDagfEVTDRTGTGttpVVRNAIISGEIDIYPEYTGNGAFFFdetdsp----vwnda 111 Chlorobi bacterium...
ACK81377   26 PIVIGSKsDTEGALLGNLIALVLEDlglPVERRLGLGptlIVRSALLAGEIDLYPEYTGNVAFFSgtetdp----awkns 101 Methylobacterium c...
Feature 1                               # #                                                   
P33362    102 QQGYEKVKKLDSEhnKLIWLTPAPANNTWTIAVRQDVAEKnkltsladlsrylqeGGTFKLAASAEFieradaLPAFEKA 181 Escherichia coli 1...
NP_904062 102 AAGYQRVKQLDYDknRIVWLAPAPANNTWTIAVRRDVADAnrlrtladlgawlgrGGRFKLAASAEFierpdaLPAFQNA 181 Chromobacterium vi...
NP_108513 114 AKAYETAKKLDYDanKIVWLSPAPANNTWAIALRKEVSDAnklvtlsdfgkyvagGGKVVLAASAEFvnsaaaLPAFQTT 193 Mesorhizobium loti...
ADI14693  100 DELYETLRELDAEn-GVTYLGRSPANNTWAIAVPQALADEhglesmadladyineGGAFRLAASQEFvdrpdaLPAFEAT 178 Truepera radiovict...
ACK51078  104 RAGFLRAAMLDLKanSLVWLDPAPADNSWVIAVPNALAREqslstledfatwvnsGARAKLAASAEFveseagLPAFEAA 183 Methylocella silve...
NP_285459 170 VKAYTTVKALDLKvnKVVWLSRAPANNTWAVAVPSKLAQAnnlktmadfaryvnsGKPVKLAASQEFvdrddaLKAFEKA 249 Deinococcus radiod...
AEA33713  102 KKGYEAVKKEDLKknSIVWLTPANANNTWALATRKSFAQKnkiysledfakyvnnGGFVKLACSEEFatrkdaLPAFEKA 181 Hippea maritima DS...
ADV66694   98 RGIYALAKKYDAKn-GITWLQPANVNNTWALALPAKFAQAnklstyadlaaylkrGGTLKVAGSPEFfnrpdaFKLFERT 176 Deinococcus marico...
ADJ26211  112 QQGYLRVKELDKAanSIEWLTPAPANNTWAIAVTEALAQSaglvsledladyvngGGNFKLAGSAEFfdsplaMPAFEAA 191 Chlorobi bacterium...
ACK81377  102 AGAYGLALRLDAAh-GLVWLGRAPANNTWLIAVQGRLARErglatma-dfagavrDGAIRLAASTEFvespaaLPSFESA 179 Methylobacterium c...
Feature 1                                          #                       #                  
P33362    182 YGFklgqdQLLSLaggdtavTIKAAAQqtsgvnAAMAYGTDgpvaalGLQTLSDpqgvqPIYAPAPVVREsvlreyPQMA 261 Escherichia coli 1...
NP_904062 182 YGFklrqdQLLALaggdtsaTVKAAAEqtsgvnAAMAYGTDgpvaalGLVALADpkgvqPVYAPTPIIRAdalarhPDIA 261 Chromobacterium vi...
NP_108513 194 YGFtlkpdQLITLsggdtaaTIAAAANqtsganAAMVYGTDggiapsGLVVLEDdkgvqPVYQPAPIIREsvlkqhPEIE 273 Mesorhizobium loti...
ADI14693  179 YGFnvsgdQLVILaggnttqTVTAAANgtdgvnAAMAYGTDgiigalGMVTLSDpenavAIYQPFPAVRTevveayPQLP 258 Truepera radiovict...
ACK51078  184 YHFhlsadQLLVLsggettaTMKAASAgisgvnAAMAYATDgaldalDLRALEDprraePVYAPAPVIRAgtlaayPQIR 263 Methylocella silve...
NP_285459 250 YGFklspaQLVIVpggnttqTETAAAQgtsgvnAAMAYGTDgaigalGLVALSDpkgavAVYQPALTVRQsvaqkyPDIA 329 Deinococcus radiod...
AEA33713  182 YGFklkrsQLIILsggnttqTEKALARkinnvnFAMAYGTDgslsalNLIVLKDtkhiePIYAPTPIIRKqtldkhPEIA 261 Hippea maritima DS...
ADV66694  177 YGFtltsaQKLTLagatplqTQQAAASgqsgvnAAMAYGTDgtisalNLITLKDpknaqPVYQPAPIIRTdvlkanPKIE 256 Deinococcus marico...
ADJ26211  192 YGFslsagQTIIVgsgdtaqTEQAASQgtdgvnAAMAYGTDgalaafGLVVLEDtlgvqPIYEPAPLVRAevlatyPEIA 271 Chlorobi bacterium...
ACK81377  180 YGFslplsRIVSLpggdtavTARAAAEgisginAGMVYGTDgalaalDLTVMSDpkgaqIVYEPAPVIRSatlerhPRIR 259 Methylobacterium c...
Feature 1                                           
P33362    262 QWLqpvfasldaKTLQQLNAsiavegldakKVAADYLK 299 Escherichia coli 101-1
NP_904062 262 VWLkpvfqsldaATLQKLNAsialegrnarQVAAGYLK 299 Chromobacterium violaceum ATCC 12472
NP_108513 274 TLLkpvfakldlVTLQELNGrvqvggepvkGVAEDFLK 311 Mesorhizobium loti MAFF303099
ADI14693  259 EILdpvfaaldeATLQELNGrvavdgenpaDVAQDFLT 296 Truepera radiovictrix DSM 17093
ACK51078  264 GALapvfagldlKTLRALNEriavegedaaLVARDYMM 301 Methylocella silvestris BL2
NP_285459 330 KIMnpifakldaGTLAQLNGriavggesaaAVAKSWLA 367 Deinococcus radiodurans R1
AEA33713  262 KILkpifkslttETLQALNAkiaiegipaaFVAKDYLK 299 Hippea maritima DSM 10411
ADV66694  257 GLLnkafgtldqTTIQRLNAqiavegrsarDVASAYLK 294 Deinococcus maricopensis DSM 21211
ADJ26211  272 QILnpvfqtldlVTLQTLNGrivvdgesasTVARHYLT 309 Chlorobi bacterium BL-DC-9
ACK81377  260 EALdpifarldaDTLRRLNAaitvegrtaeAVAKAWLA 297 Methylobacterium chloromethanicum CM4

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