5H1Y,5GVR,5GVS


Conserved Protein Domain Family
DEADc_DDX41

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cd17951: DEADc_DDX41 
Click on image for an interactive view with Cn3D
DEAD-box helicase domain of DEAD box protein 41
DDX41 (also called ABS and MPLPF) interacts with several spliceosomal proteins and may recognize the bacterial second messengers cyclic di-GMP and cyclic di-AMP, resulting in the induction of genes involved in the innate immune response. Diseases associated with DDX41 include "myeloproliferative/lymphoproliferative neoplasms, familial" and "Ddx41-related susceptibility to familial myeloproliferative/lymphoproliferative neoplasms". DDX41 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350709
Aligned: 14 rows
Threshold Bit Score: 373.598
Created: 30-Jan-2014
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingDEAD box
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on structures of other members of the DEAD-box helicase family with bound ADP/AMP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                ## ###  #                 ########                                      
5H1Y_A        63 ILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCleqekrlpfskrEGPYGLIICPSRELAR 142 human
NP_001071981 197 IIIGLKKKHIRKPTPIQTQGIPVVLSGRDMIGIAFTGSGKTLVFTLPLLMFCieqekklpflqnEGPYGLIVCPSRELAR 276 Ciona intestinalis
ADY42068     226 IIRSLREKKIISPTVIQMQGIPVVLSGRDMIGIASTGSGKTLTFALPLVMFCleqeislpfrhgEGPYGLIIVPSRELAK 305 pig roundworm
CBZ51296     235 ILKGLQERGISFPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPMIMGAlesetraaylpgEGPFGLVVCPSRELAS 314 Neospora caninu...
Q9LU46       157 VLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIAlqeemmmpiaagEGPIGLIVCPSRELAR 236 thale cress
NP_524220    188 ILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFAleqeyslpfernEGPYGLIICPSRELAK 267 fruit fly
Q54KG1       233 VIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFAleeecklpiiqgEGPFGLILCPSRELAR 312 Dictyostelium d...
NP_001133799 185 ILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFSleqekrlpfcksEGPYGLIICPSRELAK 264 Atlantic salmon
EGF97819     176 LLKYLKEKKIKAPTPIQMQGLPVALSGRDMIGIAFTGSGKTLAFSLPLLLFAleaekklpfiqgEGPVGIIVCPSRELAR 255 Melampsora lari...
CCA26569     207 ILKALKAKKINRPTPIQVQALPCILSGRDLIGIAFTGSGKTITFTLPLIMFAleeemkmpiigqEGPFGIIVGPSRELMR 286 Albugo laibachi...
Feature 1                                                                                        
5H1Y_A       143 QTHGILEYYCRLlqed-ssplLRCALCIGGmsvkeq-metirhGVHMMVATPGRLMDLLQKKmvSLDICRYLALDEADRM 220 human
NP_001071981 277 QTHQVMSYYAKHlegg-glpsLRIALCIGGipaket-vniirkGCHAVIATPGRLMDMLNKKmmNLGVCRFLCLDEADRM 354 Ciona intestinalis
ADY42068     306 QIHDVIERIFESitigsgfprLRVGLCIGGlpigeq-arvferGVHVAVATPGRLSDLLSKKvfNLQICRYLVLDEADRM 384 pig roundworm
CBZ51296     315 QTNDVCSFFCKKleeg-gypaLRCLCVIGGcsvveq-arevrqGVHCIVATPGRLTDMLNKRrlSLQQCEYLCFDEADRM 392 Neospora caninu...
Q9LU46       237 QTYEVVEQFVAPlvea-gyppLRSLLCIGGidmrsq-levvkrGVHIVVATPGRLKDMLAKKkmSLDACRYLTLDEADRL 314 thale cress
NP_524220    268 QTHEIIQHYSKHlqac-gmpeIRSCLAMGGlpvsea-ldvisrGVHIVVATPGRLMDMLDKKilTLDMCRYLCMDEADRM 345 fruit fly
Q54KG1       313 QTYDLVNSFTNAlhkngghpqLRTLLAIGGidlreq-ehifkkGVHMIIATPGRLLDLLNKKkiNFKLCKYLGLDEADRL 391 Dictyostelium d...
NP_001133799 265 QTHTIIEYYCKLleee-gaphMRSVLCIGGmsvkdq-mevvkhGVHMMVATPGRLMDLLQKKmiSLDICRYLALDEADRM 342 Atlantic salmon
EGF97819     256 QTYETIVAMALAcaqsgkypqVGTLLCIGGismadq-shvmskGFHIVVATPGRLQDMLEKRkfNLDNCKYLCLDEADRM 334 Melampsora lari...
CCA26569     287 QTFEVVQHFTEAlsaa-gypqLRSLLLIGGedkrtqceliarkGVHIVVATPGRLNHLLKTNemNLRLCKYICLDEGDRM 365 Albugo laibachi...
Feature 1                                                        
5H1Y_A       221 IdMGFEGDIRTIFSYFKgQRQTLLFSATMPKKIQNFAKSALVKPVTIN 268 human
NP_001071981 355 IdMGFEEDVRTIFSYFKgQRQTLLFSATMPKKIQNFARSALVCPVTVN 402 Ciona intestinalis
ADY42068     385 LdMGFEEEIRTIFSFFKgQRQTLLFSATMPRKIQNFARSALVRAIIVN 432 pig roundworm
CBZ51296     393 VdMGFEEEVRNVLDSFGhQRQTLLFSATMPRKIQEFAKSALIDPLVVN 440 Neospora caninum Liverpool
Q9LU46       315 VdLGFEDDIREVFDHFKsQRQTLLFSATMPTKIQIFARSALVKPVTVN 362 thale cress
NP_524220    346 IdMGFEEDVRTIFSFFKgQRQTLLFSATMPKKIQNFARSALVKPVTIN 393 fruit fly
Q54KG1       392 IdLGFEDDIRSVLDNFTnQRQTLLFSATMPKKIQEFARSALVLPVEVN 439 Dictyostelium discoideum
NP_001133799 343 IdMGFEEDIRTIFSYFKgQRQTLLFSATMPKKIQNFAKSALVKPITIN 390 Atlantic salmon
EGF97819     335 VdMGFEEDMRNIMSFFKrQRQTLLFSATMPKTIRNFAENSLVKPVVVN 382 Melampsora larici-populina 98AG31
CCA26569     366 LdLGFDEEVSAIFNHFTsQRQTLLFSATMPQKFQDFAKQVLVKPVFVN 413 Albugo laibachii Nc14

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