1HXH,1ZK3,1NFR,2HSD,1HDC,1NFF,1ZJY,1NXQ


Conserved Protein Domain Family
3beta-17beta-HSD_like_SDR_c

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cd05341: 3beta-17beta-HSD_like_SDR_c 
Click on image for an interactive view with Cn3D
3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs
This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.
Statistics
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PSSM-Id: 187600
Aligned: 13 rows
Threshold Bit Score: 346.293
Created: 13-Dec-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1HXH_A         2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAaGQQLAAELGe---rSMFVRHDVSSEADWTLVMAAVqRRL 78  Comamonas testo...
1ZK3_H         2 NRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITDRHSDvGEKAAKSVGtp-dqIQFFQHDSSDEDGWTKLFDATeKAF 80  Lactobacillus b...
1NFR_A         3 GRLTGKVALVSGGARGXGASHVRAXVAEGAKVVFGDILDEeGKAXAAELAd---aARYVHLDVTQPAQWKAAVDTAvTAF 79  Mycobacterium t...
2HSD_A         1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEeGAATARELGd---aARYQHLDVTIEEDWQRVVAYArEEF 77  Streptomyces ex...
1HDC_A         1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEeGAATARELGd---aARYQHLDVTIEEDWQRVVAYArEEF 77  Streptomyces ex...
1NFF_A         3 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEeGKAMAAELAd---aARYVHLDVTQPAQWKAAVDTAvTAF 79  Mycobacterium t...
1ZJY_A         2 NRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITDRHSDvGEKAAKSVGtp-dqIQFFQHDSSDEDGWTKLFDATeKAF 80  Lactobacillus b...
1NXQ_A         2 NRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDvGEKAAKSVGtp-dqIQFFQHDSSDEDGWTKLFDATeKAF 80  Lactobacillus b...
ZP_01060481    2 KRVKNKVAIVTGGASGLGKSSAKLLAREGAKIVVSDIDEEgGKKVVQQIKedggeAIFIKQDVAKEDEWKNVIETTlETY 81  Leeuwenhoekiell...
YP_002778752   6 QQLAGKVVIVTGAARGLGAAFAQRIVDEGGSVVVGDVLDDdGRATVDQLGd---rARYCHLDVTDPQQWQAAVDVAtSDF 82  Rhodococcus opa...
Q8GAV9         2 GRVNDKVVLVTGGAMGMGLTHCTLLAREGATVYLSDMNEElGHQAVAEIRrqggkAHFLHLDVTNENHWTGAVDTIlAES 81  Comamonas sp. N...
P19992         2 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEeGAATARELGd---aARYQHLDVTIEEDWQRVVAYArEEF 78  Streptomyces ex...
ZP_01617041    2 ISVKDKVVIVTGAASGLGEADARMLAAESAIVIMTDINADtGQRIAEEIG-----ATFFQQDVSSESGWSDLINLVrSQF 76  marine gamma pr...
Feature 1                                        #                            #            #   # 
1HXH_A        79 GTLNVLVNNAGILLpgdMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASVSSWLPIEqyAGYSASKA 156 Comamonas testo...
1ZK3_H        81 GPVSTLVNNAGIAVnksVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGlgASIINMSSIEGFVGDPslGAYNASKG 160 Lactobacillus b...
1NFR_A        80 GGLHVLVNNAGILNigtIEDYALTEWQRILDVNLTGVFLGIRAVVKPXKEAGr-GSIINISSIEGLAGTVacHGYTATKF 158 Mycobacterium t...
2HSD_A        78 GSVDGLVNNAGISTgmfLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGg-GSIVNISSAAGLMGLAltSSYGASKW 156 Streptomyces ex...
1HDC_A        78 GSVDGLVNNAGISTgmfLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGg-GSIVNISSAAGLMGLAltSSYGASKW 156 Streptomyces ex...
1NFF_A        80 GGLHVLVNNAGILNigtIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGr-GSIINISSIEGLAGTVacHGYTATKF 158 Mycobacterium t...
1ZJY_A        81 GPVSTLVNNAGIAVnksVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGlgASIINMSSIEGFVGDPslGAYNASKG 160 Lactobacillus b...
1NXQ_A        81 GPVSTLVNNAGIAVnksVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGlgASIINMSSIEGFVGDPslGAYNASKG 160 Lactobacillus b...
ZP_01060481   82 GKLHILANSAGIGLggtVEDVTLEDWKNLIDINLNGTFLGTKYGIKGMRKTDegGSIINFSSIEGLIGDPnlPAYNASKG 161 Leeuwenhoekiell...
YP_002778752  83 GRVDGLVNNAGISTgqyIEHEPLEHFQTVLDINLTGVFNGLQAVIGPMRAAGg-GSIVNISSAAGLMGLAltAGYGASKW 161 Rhodococcus opa...
Q8GAV9        82 DRLDALVNNAGILTlkpVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHk-GCIVNVSSIYGLVGAPgaAAYEASKG 160 Comamonas sp. N...
P19992        79 GSVDGLVNNAGISTgmfLETESVERFRKVVDINLTGVFIGMKTVIPAMKDAGg-GSIVNISSAAGLMGLAltSSYGASKW 157 Streptomyces ex...
ZP_01617041   77 GRLDALVNNAGIAVianIETTTADQWRRTMATHLDGTFWGCQSAIPLMKESGg-GSIINMSSTAALVGIPayLAYSAAKG 155 marine gamma pr...
Feature 1                                                                                        
1HXH_A       157 AVSALTRAAALSCRkqgyAIRVNSIHPDGIYTPMMQASlpkgvske--mvlhdpklNRAGRAYM-PERIAQLVLFLASDE 233 Comamonas testo...
1ZK3_H       161 AVRIMSKSAALDCAlkdyDVRVNTVHPGYIKTPLVDDLpgaeea------msqrtkTPMGHIGE-PNDIAYICVYLASNE 233 Lactobacillus b...
1NFR_A       159 AVRGLTKSTALELGp--sGIRVNSIHPGLVKTPXTDWVped------------ifqTALGRAAE-PVEVSNLVVYLASDE 223 Mycobacterium t...
2HSD_A       157 GVRGLSKLAAVELGt--dRIRVNSVHPGMTYTPMTAETgirqge-------gnypnTPMGRVGE-PGEIAGAVVKLLSDT 226 Streptomyces ex...
1HDC_A       157 GVRGLSKLAAVELGt--dRIRVNSVHPGMTYTPMTAETgirqge-------gnypnTPMGRVGNePGEIAGAVVKLLSDT 227 Streptomyces ex...
1NFF_A       159 AVRGLTKSTALELGp--sGIRVNSIHPGLVKTPMTDWVped------------ifqTALGRAAE-PVEVSNLVVYLASDE 223 Mycobacterium t...
1ZJY_A       161 AVRIMSKSAALDCAlkdyDVRVNTVHPGYIKTPLVDDLpgaeea------msqrtkTPMGHIGE-PNDIAYICVYLASNE 233 Lactobacillus b...
1NXQ_A       161 AVRIMSKSAALDCAlkdyDVRVNTVHPGYIKTPLVDDLpgaeea------msqrtkTPMGHIGE-PNDIAYICVYLASNE 233 Lactobacillus b...
ZP_01060481  162 GVTIFTKSAALHCAkqgyGIRINSIHPAYIWTPMVENFlkaqgdvee-gkkqleslHPIGHLGE-PDDIGYGVVYLASDE 239 Leeuwenhoekiell...
YP_002778752 162 GVRGLTKIAAVELGt--dRIRVNSVHPGMTYTPMTAGLgieqge-------gnypnTPMARVGV-PDEIAGAVGFLLSDA 231 Rhodococcus opa...
Q8GAV9       161 AVRLFTKACAVDLAp--fNIRVNSVHPGVIATPMTQQIldapqsa-----rallgpTLLGRAAQ-PMEVSQAVLFLVSDE 232 Comamonas sp. N...
P19992       158 GVRGLSKLAAVELGt--dRIRVNSVHPGMTYTPMTAETgirqge-------gnypnTPMGRVGNePGEIAGAVVKLLSDT 228 Streptomyces ex...
ZP_01617041  156 GILSMTKSIAVHCKqqklGIRCNSIHPGSISTPMVHEAvktlagidmtampdveqgRKDMGIGE-PDDIAHMVTYLISDA 234 marine gamma pr...
Feature 1                          
1HXH_A       234 SSVMSGSELHADNSILGM 251 Comamonas testosteroni
1ZK3_H       234 SKFATGSEFVVDGGYTAQ 251 Lactobacillus brevis
1NFR_A       224 SSYSTGAEFVVDGGTVAG 241 Mycobacterium tuberculosis
2HSD_A       227 SSYVTGAELAVDGGWTTG 244 Streptomyces exfoliatus
1HDC_A       228 SSYVTGAELAVDGGWTTG 245 Streptomyces exfoliatus
1NFF_A       224 SSYSTGAEFVVDGGTVAG 241 Mycobacterium tuberculosis
1ZJY_A       234 SKFATGSEFVVDGGYTAQ 251 Lactobacillus brevis
1NXQ_A       234 SKFATGSEFVVDGGYTAQ 251 Lactobacillus brevis
ZP_01060481  240 SKFMTGSELVIDGGYTAQ 257 Leeuwenhoekiella blandensis MED217
YP_002778752 232 STYVTGAELAVDGGWTAG 249 Rhodococcus opacus B4
Q8GAV9       233 ASFVHGSELVVDGGYTAN 250 Comamonas sp. NCIMB 9872
P19992       229 SSYVTGAELAVDGGWTTG 246 Streptomyces exfoliatus
ZP_01617041  235 SKHINGAQIVIDNADTVV 252 marine gamma proteobacterium HTCC2143

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