1GKA,1OBU,1S2P,4ALO


Conserved Protein Domain Family
lipocalin_crustacyanin

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cd19436: lipocalin_crustacyanin 
crustacyanin Type I CRTC and Type II CRTA subunits
Alpha crustacyanin bound with the carotenoid astaxanthisn (AXT) is the predominant cartenoprotein generating the slate-grey/blue color of the lobster carapace. Crustacyanin forms heterodimers (beta-crustacyanin) or complexes of 16 subunits (alpha-crustacyanin) assembled from beta-crustacyanin. Beta-crustacyanin is formed from one type I CRTC lipocalin subunit, and one type II CRTA lipocalin subunit (and two bound astaxanthin molecules). Homarus gammarus (European lobster) crustacyanin has of five distinct subunits evident on 6 M urea-PAGE gels: type I CRTC ( A1, C1, C2) and type II CRTA ( A2, A3). Homarus americanus crustacyanin consists of only two major subunits, namely type I CRTC (H1) and type II CRTA (H2), both of which behave like Ax subunits on a 6 M urea-PAGE gel. This family includes both type I CRTC subunit and type II CRTA subunits and belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.
Statistics
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PSSM-Id: 381211
Aligned: 11 rows
Threshold Bit Score: 252.777
Created: 2-Jan-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:astaxanthin binding site [chemical binding site]
Evidence:
  • Structure:1GKA; Homarus gammarus beta-crustacyanin bound with astaxanthin, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     ## #                              #     # ##                      #             
1GKA_B      3 IPSFVTAGKCASVANQdn-----fdLRRYAGRWYQTHIIENAYQPVTRCIHSNYEYSTndYGFKVTTAGFNPNDEYLKID 77  European lobster
1OBU_B      3 IPDFVVPGKCASVDRNklwaeqtpnRNSYAGVWYQFALTNNPYQLIEKCVRNEYSFDG--KQFVIESTGIAYDGNLLKRN 80  European lobster
1S2P_A      3 IPNFVVPGKCASVDRNklwaeqtpnRNSYAGVWYQFALTNNPYQLIEKCVRNEYSFDG--KQFVIKSTGIAYDGNLLKRN 80  European lobster
4ALO_A      3 IPDFVVPGKCASVTRNklwaeqtpnRNMYAGVWYQFALTNNPYQLIEKCVRNEYSFDG--EQFVITSTGIAYDGNLLKRN 80  American lobster
P80007      3 IPSFVTAGKCASVANQdn-----fdLRRYAGRWYQTHIIENAYQPVTRCIHSNYEYSTndYGFKVTTAGFNPNDEYLKID 77  European lobster
ALC79588   19 IPSFVTPGKCASVANQdn-----fdLRKYAGRWYQTHIIENPYQPVTRCVHSNYDYSEsdYGFKVTTAGFNPSDEYLKLD 93  Cherax quadricarin...
ACL37112   19 IPSFVKPGKCASVANQdn-----fdLRRYSGRWYITHMIEIDYMPVSSCIHSNYEYSStdYGFDVATAGFDLKNDYLTID 93  Panulirus cygnus
ASY04981   18 IPXFVAPGXCAKVANQdn-----fdLRRYAGRWYQVKIIDNAYQPYTRCIHSNYDYSDsdYGFKVTTAGFSPNNEYLRLQ 92  Penaeus monodon
ASY04980   13 IPDFVVPGNCAKVANQdn-----fdLRRYSGRWYQTQIIDNAYQPFTRCIHSNYDYSDsdYGFKVTTAGFSPNNEYLRLQ 87  Penaeus longistylus
ACL37113   19 APGFVQPGKCAELPIQnn-----fdLRKYAGRWYQSHAIPNPFEPGTSCLHAYFDYSEtlYGFHVSSAGLGAENDYLKLE 93  Panulirus cygnus
AKS26012   20 IPDFVVPGRCPAVDEKslfdeqipnHPKYAGVWYEIALTNNPYQLLQQCVRNEYSFDG--NKFIAKSTGINADGNLMKRN 97  Penaeus monodon
Feature 1     #       #   #  # #   ####               # # ##  # # # #                         
1GKA_B     78 FKVYPTkEFPAAHMLIDAPSVFAAPYEVIETDYETYSCVYSCITTD-NYKSEFAFVFSRTPQTSGPAVEKTAAVFNKNgV 156 European lobster
1OBU_B     81 GKLYPN-PFGEPHLSIDYENSFAAPLVILETDYSNYACLYSCIDYNfGYHSDFSFIFSRSANLADQYVKKCEAAFKNInV 159 European lobster
1S2P_A     81 GKLYPN-PFGEPHLSIDYENSFAAPLVILETDYSNYACLYSCIDYNfGYHSDFSFIFSRSANLADQYVKKCEAAFKNInV 159 European lobster
4ALO_A     81 GKLYPN-PFGEPHLSIDYEMSFAAPLVILETDYSNYACLYSCIDYNfGYHSDFSFIFSRSANLADKYVKKCEAAFKNInV 159 American lobster
P80007     78 FKVYPTkEFPAAHMLIDAPSVFAAPYEVIETDYETYSCVYSCITTD-NYKSEFAFVFSRTPQTSGPAVEKTAAVFNKNgV 156 European lobster
ALC79588   94 FSVYPTkEFPAAHMLIDAPSVFASPYEVIETDYDTYSCVYSCVTTD-KYKSEFGFVFSRTPQTSGPAAEKCAAVFNKNgV 172 Cherax quadricarin...
ACL37112   94 FKVYPTkEFPASHMLIDAPSVFASPYEVIETDYDTYSCVYSCIGTD-NYKSEFGFVFSRFATTEGPAKEKCASVFAKNgV 172 Panulirus cygnus
ASY04981   93 GKIYPTkDFPXAHMLIDFPXVFAAPYEVIETDYXSYXCVYSCIDTD-KYKSEFGFVFSRTPQNSSPAIDRCASVFRRNgV 171 Penaeus monodon
ASY04980   88 GKIYPTkDFPAAHMLIDFPTALAAPYEVIETDYENYACVYSCIDWD-NYKSEFGFVFSRTPQNSGPASDKCASVFRRNgV 166 Penaeus longistylus
ACL37113   94 FDVYPVkEFPAAHMLLDGPTMIAAPFEVVETDYKSYSCVYSCNSMG-GYRAEFGFVFTRSLANAGPAAERCAAVFNKNgV 172 Panulirus cygnus
AKS26012   98 GQILPM-PLGDPHLSVDYEGSWIAPYVILDTDYENFSCIYSCTEYNfGYYSDFSFIFSRSPKLADQYLRRCEAAFKNIgV 176 Penaeus monodon
Feature 1                    
1GKA_B    157 EFSKFVPVSHTAECV 171 European lobster
1OBU_B    160 DTTRFVKTVQGSSCP 174 European lobster
1S2P_A    160 DTTRFVKTVQGSSCP 174 European lobster
4ALO_A    160 DTTRFVKTVQGSSCP 174 American lobster
P80007    157 EFSKFVPVSHTAECV 171 European lobster
ALC79588  173 EFSKFKPVQQTAECV 187 Cherax quadricarinatus
ACL37112  173 DFSLFNPVSHTAQCV 187 Panulirus cygnus
ASY04981  172 DFSLFNVVPHTAECV 186 Penaeus monodon
ASY04980  167 DFSNFNVVPHTSDCA 181 Penaeus longistylus
ACL37113  173 EFSRFEPISHPKDCV 187 Panulirus cygnus
AKS26012  177 DVSRFTKTVQGSDCP 191 Penaeus monodon

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