6JRF,6KVO,6IS8,6LCT,6LCM,6IS9,6KVN,6JRG


Conserved Protein Domain Family
MOC1

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cd22992: MOC1 
Click on image for an interactive view with Cn3D
Monokaryotic chloroplast 1 protein (MOC1) and similar proteins
Monokaryotic chloroplast 1 protein (MOC1) is a Holliday junction (HJ) resolvase, originally identified from the green algae Chlamydomonas reinhardtii, but was later shown to be genetically conserved among green plants, such as Arabidopsis thaliana and Zea mays. Nicotiana tabacum MOC1 (NtMOC1) is exclusively localized to chloroplasts, and is essential for chloroplast nucleoid segregation. Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. NtMOC1 cleaves only four-way junctions and specifically introduces nicks between two cytosines at the homology core. NtMOC1 has the highest structural similarity to RuvC resolvase, suggesting their potentially similar HJ binding and resolution activities. However, the molecular basis for specific HJ resolution by MOC1 remains elusive. This family also includes bacterial homologs.
Statistics
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PSSM-Id: 438565
Aligned: 256 rows
Threshold Bit Score: 97.2079
Created: 21-Apr-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
catalytic sitenucleic acidhomodimer
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:catalytic site [active site]
Evidence:
  • Comment:Nicotiana tabacum chloroplast resolvase MOC1 (6KVO) contains four acidic amino acids, namely D116, D118, E175, and E258, which coordinate a magnesium ion approach to the cleavable phosphodiester backbone, constituting the catalytic tetrad.
  • Structure:6KVO: Nicotiana tabacum chloroplast resolvase MOC1 binds Mg2+ ion.
    View structure with Cn3D
  • Structure:6JRF: Zea mays monokaryotic chloroplast 1 (MOC1) binds Ca2+ ion among its catalytic site.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            # #                                                              #          
6JRF_A        14 VIGVDPDIGGAIAVLSpd--gSSQVFDNPFVHIVvsevirkrlDTKSIIQLLRGLda----ppGTTAYIEKSSPFPtdgK 87  Zea mays
RTL04959       4 VAGIDPGTNGAVGVYCteqrkLISVEDLPTWNQTigkkqrkriDPVALMELFDTLsl----mgVELVVLEAVGGRPrqgA 79  Candidatus Depe...
PIV57405       3 VLGIDPDLNGAMALVVtndqeRTRVIDLPTQVLTinrktrvkfDEPRLYSMILGFg------kVDLVLVEEPFISPfasK 76  Candidatus Desa...
TQV61938       2 ILGIDPGLTGALAILDtq-grVSLLEDLPTVHRGsgkv-krelDPAGLTHLLRPHap-----mIRLALVEAVASRPgqgV 74  Halothiobacilla...
WP_008932473   2 ILGIDPGLTGAVAALAsd-hrVELLEDLPTVARGsgrv-rrelDAAGLAHLLRPIag-----dVRLAVVEQVASRPgqgV 74  Ectothiorhodosp...
WP_114481989   6 YIGVDPGLTGAVAVLTer-geLVEVADLPTFKAAsgr---sliDAQRLALMLGKYr------hSARVFVEQVAARPtdsR 75  Extensimonas vu...
WP_147798292   3 FLGIDPGLHGALAWIAdt-geVIDVADVPLLDEGprk---ksiDAAALLALVKRHe-------AHMAVIETVHARPtdsK 71  Pelomicrobium m...
WP_107221824   6 FLGIDPGLSGALAVLTda-grLVDVVTMPTEPHGksr----rvSGREVRAWLEGIteatggapFALCVLEQVASRPgqgA 80  Thauera aromatica
WP_145279742   5 IVGIDPGKKGAIAILGed-gsLLDLYDMPLTAPGkeg----rvDARKLAGMLAGR--------CGTAVIEKVGYVPgdgG 71  Pseudomonas sp....
WP_060303815   4 FLGIDPGANGAYALHSp---dGWIVEDLPHTEEGa-------fDAAALYHRLLTAg-------PLVVALERPLPFTisnA 66  Burkholderia ce...
Feature 1                                                                                        
6JRF_A        88 QGWWSTGFSYGLWIASLVAs-gFSVVPIASQtWKAYFGLMRse------tPKDDSRQAASILFpdkd-------qslkLK 153 Zea mays
RTL04959      80 AAGFVFGYTVGLIYMSCMYn-kLPVETIPPGhWKKVMRIPGkgngkgkeaMKNAEKAIKIRVNeifpnem-amfttprGA 157 Candidatus Depe...
PIV57405      77 LAISTSYYNYGWFCGMLAAs-gRSFKSVKPKiWQRQVGIVDtks----asTKAKCYEIASRLYpwie-------ftegRK 144 Candidatus Desa...
TQV61938      75 ASVFSLGHTLGVIHGVLAAm-gIPWQPVTPStWKKSAGLGT---------DKEASRAMAARLYpsi---------qlhRK 135 Halothiobacilla...
WP_008932473  75 ASMFSLGHTAGAICGVLAAl-gIPLVLVPPAaWKKALNVPTg-------sDKDMSRTIAARFHpdl---------nlsRK 137 Ectothiorhodosp...
WP_114481989  76 VAAFAFGRSLGAIEAAVAIa-gIPMTRSQPAaWKRTAGIGAg-------sAKDASIEAARRLVpase-------plltAK 140 Extensimonas vu...
WP_147798292  72 VAAFTFGRNLGALEAIIMAa-gLPLHRVAPItWRRWAGLAPg-------aPKEASIAVALRLApsa----------rpFL 133 Pelomicrobium m...
WP_107221824  81 PSIFTFGRAFGAVEGVLSAl-aVPTDYAAPQaWKRAFGLTS---------DKAESIRKAIDLVpglag------wprpKG 144 Thauera aromatica
WP_145279742  72 LGAFSFGESAGAARGVVEAl-gFETILVRPQeWRRLHGLKGa--------DKRVVGMLAIELYpaaqvttgrknkageIG 142 Pseudomonas sp....
WP_060303815  67 DSMLKLGQSYGALLACVSIlpdSRVLTPTARsWKAAMGLTS---------EKGVSVARAREVLefg----------pkQR 127 Burkholderia ce...
Feature 1              #         
6JRF_A       154 KHHGRAEALLLAAYGK 169 Zea mays
RTL04959     158 YKMDRADASLIAKFGG 173 Candidatus Dependentiae bacterium
PIV57405     145 TYYGRADALMIATFGL 160 Candidatus Desantisbacteria bacterium CG02_land_8_20_14_3_00_49_13
TQV61938     136 ADHNLAEALLIARHGL 151 Halothiobacillaceae bacterium
WP_008932473 138 RDHNMADALLLARYGL 153 Ectothiorhodospira sp. PHS-1
WP_114481989 141 SHHNRADALLIAWHGL 156 Extensimonas vulgaris
WP_147798292 134 SRHDRADAVLIALFFN 149 Pelomicrobium methylotrophicum
WP_107221824 145 PTHDQAEAVLLAEFAR 160 Thauera aromatica
WP_145279742 143 IKDGRTDALLIARYGL 158 Pseudomonas sp. URMO17WK12:I11
WP_060303815 128 LRHDKAEAVLLAVWAG 143 Burkholderia cepacia

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