1Y4T,2VOZ,2PT1,2PT2,1Q35,1Y9U


Conserved Protein Domain Family
PBP2_FutA1_ilke

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cd13542: PBP2_FutA1_ilke 
Click on image for an interactive view with Cn3D
Substrate binding domain of ferric iron-binding protein, a member of the type 2 periplasmic binding fold superfamily.
FutA1 is the periplasmic component of an ABC-type iron transporter and serves as the primary receptor in Synerchosystis species. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria and is critical for survival of these pathogens within the host. After binding iron with high affinity, FutA1 interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270260
Aligned: 15 rows
Threshold Bit Score: 417.507
Created: 21-Sep-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1Y4T; Campylobacter jejuni ferric-binding protein binds ferric iron, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1Y4T_A         3 ELNIYSARhYNADFEIIKKFeektgIKVNHTQAkASELIKRLSlegsnsPADIFITADISNLTEAKNlgllspvssKYLE 82  Campylobacter j...
NP_894120     32 EVRVYSGRhYNTDRQIYKKFseqtgIKVRLIESsGISLLERLKregansQADVIILVDAARISNAAKegllqpsrsAKLD 111 Prochlorococcus...
NP_561354     42 IVNVYSSRhYDIDKQLFKDFesdtgIKVNLVDGkSDELIERMAregdntSADVFLTVGAENIAQLNEkdlikdissEKIN 121 Clostridium per...
1Q35_A         3 EVNVYSYRqPYLIEPMLKNFekdtgIKVNIIFA-DKGLVDRVKqegelsPADVLLTVDISRVMEIVNadlaqkidsKVLE 81  Mannheimia haem...
NP_384835     29 EVNIYSYRqPDLIQPLLDAFtkktgITTNVLFL-DKGLVERIQaegansPADVILTVDISRLTEAKDagvtqpvanETIN 107 Sinorhizobium m...
YP_001633965  69 IVYVYSARhYGQMETAFAEFtketgIEVRFTFGsDAELRERLKaegrftPADVLFTVDAANLWLAAQegllrpinsDVLE 148 Chloroflexus au...
NP_968008     22 KLVLYSSYdGERLAPILQPFtqatgIQVEVVFAsSTDLLKQLEteglnsRADLYLDKDIVYMGEANRkgflqsftsNGVT 101 Bdellovibrio ba...
1Y9U_A         7 EVSLYTTRePKLIQPLLDAFakdsgIKVNTVFV-KDGLLERVRaegdksPADVLMTVDIGNLIDLVNggvtqkiqsQTLD 85  Bordetella pert...
ACQ70858      39 VVNVYSSRhYDVDQQLYKQFeeetgIKVNVVEGkSDELLERLNtegentEADLFITADAGNLYQAKEaghlqavdsDELE 118 Exiguobacterium...
ADR21652      58 EVNVYTHRhYESDQQLFKDFeektgIKVNVVSAnADELIQKMTlegensPADVLITVDAGRLHRAKEadllqsvesETLN 137 Flexibacter tra...
Feature 1                                                                   ##                   
1Y4T_A        83 EFIPAHLRdkdkEWFAITKRARIIAYNKNtnidiskmknYEDLAKAEFKGEIVMRSaTAPYSKTLLASIIANdgnkEAKA 162 Campylobacter j...
NP_894120    112 SEVPSAYRdprgRWYGLTRRVRVIVANPSkvnvg-sirtYADLASPSLQGKVCLRKrNNVYNQSLVADQLVLrgeaATKS 190 Prochlorococcus...
NP_561354    122 ENIPSEYRg--kNWVGLTSRARIIVYNKEkvnpe-tiktYNDLTKNEFKGKVLTRSsSSSYNNALLSSFIQLdgadKAKE 198 Clostridium per...
1Q35_A        82 KNIPAQFRdsndQWFGLTTRARVIYTSKDrvgklpagfdYLDLAKPEYKGKVCVRSgKNSYNVSLFAAMIEHygieKTKA 161 Mannheimia haem...
NP_384835    108 KDIPDHFRdpdgNWFGLTTRGRVVYASKErvaq--dditYEELADPKWKGKICTRDgQHSYNVGLFASMIAHhgeaEAEK 185 Sinorhizobium m...
YP_001633965 149 SNIPDYLQdpsnQWYALSLRVRTIAYHPDrvnpe-eiatYESLADPKWAGRICWRPsTKSYTQSLVSSLIVHhgydKAKE 227 Chloroflexus au...
NP_968008    102 QKVPSHLIsddkNWFLLFYRARTVMYNTQkvnpe-dlktYADLGDPKWKGQLCLRTsKNSYNEAMAAYFIKHfgeiQTTA 180 Bdellovibrio ba...
1Y9U_A        86 SVVPANLRgaegSWYALSLRDRVLYVEKDlkld---sfrYGDLADPKWKGKVCIRSgQHPYNTALVAAMIAHdgaeATEK 162 Bordetella pert...
ACQ70858     119 SNIPEKYRdtdnEWFGLTKRARVIVYSKDrvkpe-dlstYEALTEEQWNGKVLVRPsENMYNISLLASFIEVngvdEAKE 197 Exiguobacterium...
ADR21652     138 NTISSNLRdvdnQWFGLTIRGRVIVYNPEkisae-kistYESLANPDINGRLLIRSsSNIYNQSLMASIIAHngeeAAST 216 Flexibacter tra...
Feature 1                       ###                # ##                                          
1Y4T_A       163 WAKGVLEnlaTNPKGGDRDQARQVFAGeAKFAVMNTYYIGLLKnsknpk-dvevgnSLGIIFpnqd---nrgtHINISGI 238 Campylobacter j...
NP_894120    191 WLQGMISnvsQPYFGGDVSLARAVSQGiCGVGIVNHYYVARMRagvsgskdkalanKLTVITpd-------paHVNVSAG 263 Prochlorococcus...
NP_561354    199 WAQGIVNnfaRTPEGNDRDQAKAIMAGiGDVGIMNSYYIAKMIsssdae-eakvgkEIGVLFpe-------ntHLNLSFG 270 Clostridium per...
1Q35_A       162 FLEGLKAnlaRKPQGGDRDQVKAIKEGiCDYSIGNSYYYGKMLddekq---kswaeAAIINFpsge----hgtHKNISGV 234 Mannheimia haem...
NP_384835    186 WLTGLRNnlaKKPDGGDRDQAKAIFAGeCDLALGNSYYVGLMItnekepeqkewasAIKVLFpntk---drgtHVNISGM 262 Sinorhizobium m...
YP_001633965 228 IVTGWAQn-aKEYIDSDTRILQTIAEGgCDISVVNHYYLARLLsed-------anyPVKLLWanqa---eqgvHVNASGA 296 Chloroflexus au...
NP_968008    181 LLESWVKnlaVEPLKGDRDVIAAIANGtCAIGVANTYYLAPIVrdd-------vtyPVGVRFleqd---kvgaHINGVGI 250 Bdellovibrio ba...
1Y9U_A       163 WLRGVKAnlaRKAAGGDRDVARDILGGiCDIGLANAYYVGHMKnaepgtdarkwgdAIKVVRptfatakdggtHVNISGA 242 Bordetella pert...
ACQ70858     198 WAKGLVNnmaRDPQGNDRDQAKAVVAGeGDVAIMNTYYMGLMLnsedee-ekkvaeQLGVFFpnqd---ttgtHVNISGI 273 Exiguobacterium...
ADR21652     217 WASSIVNnmaRDPKGGDRDQIKAVYAGeGDVAVSNTYYLGKMLnsssee-evkvaqAVKILFpnqd---grgtHINVSGA 292 Flexibacter tra...
Feature 1                                                                                       
1Y4T_A       239 AMTKssknqDAAKKFMEFMLSPEIQKILTDSnYEFPirndvelsqtvkdfgtfkedqipvskiaenikEAVKIYDEVGF 317 Campylobacter je...
NP_894120    264 GLARyaknkKEAIELLEFLASPDGSQGMAGPtYEHPlngygtslelkkfgtf-rpdrvtisqlgannsKAIQLMAQSGW 341 Prochlorococcus ...
NP_561354    271 AVTKnakneENAVALLEYLTEEKAQKAYVDEnGEFAlntkvgkselqkswgdftvqnlnyetlgeskqEATLIFDQVGW 349 Clostridium perf...
1Q35_A       235 VIAKhspnkANAVKLIEYLSGEKAQGLYAELnHEYPvkegiepsaivkgwgtfksdtiklediaknyeAALKLVDEVKF 313 Mannheimia haemo...
NP_384835    263 ALAKnapnkENALKLMEFLSEGEAQKIYAEQvFEYPvlpgaepsevvksfgeikpdtlplaeiaanrkKASELVDKVGY 341 Sinorhizobium me...
YP_001633965 297 GVTTyarhpENAIRLLEWLSTERGQRLFADSnFEYPanpnvapheliqqwgdfkrdtlqiseigslqaDAIKLMNEAGY 375 Chloroflexus aur...
NP_968008    251 GITKsskntAAANAFLEFMVSKPVQEAVAGGfSQYPaskeadmapilkefggfaedmtnvnavsdlvpAGIELMKKAGY 329 Bdellovibrio bac...
1Y9U_A       243 AVAAhapnkANAVKLLEYLVSEPAQTLYAQAnYEYPvragvkldavvasfgplkvdtlpvaeiakyrkQASELVDKVGF 321 Bordetella pertu...
ACQ70858     274 AMTKaskntENAQKLMEFMSEPSAQEKFASVnYEYPvnesvepnellqswgefkeqdinlsalgenqqEAIRIFNEVGW 352 Exiguobacterium ...
ADR21652     293 GVAKyapnkENAIKFIEFLVSEEAQKVFAGVnYEYPvnekvewaptlkewgdfkrdtlnlsvlgenndLAVKIFDRAGW 371 Flexibacter trac...

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