2ADB,1SJR,3ZZY


Conserved Protein Domain Family
RRM2_PTBP1

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cd12782: RRM2_PTBP1 
Click on image for an interactive view with Cn3D
RNA recognition motif 2 (RRM2) found in vertebrate polypyrimidine tract-binding protein 1 (PTB)
This subgroup corresponds to the RRM2 of PTB, also known as 58 kDa RNA-binding protein PPTB-1 or heterogeneous nuclear ribonucleoprotein I (hnRNP I), an important negative regulator of alternative splicing in mammalian cells. PTB also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTB contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). RRM1 and RRM2 are independent from each other and separated by flexible linkers. By contrast, there is an unusual and conserved interdomain interaction between RRM3 and RRM4. It is widely held that only RRMs 3 and 4 are involved in RNA binding and RRM2 mediates PTB homodimer formation. However, new evidence shows that the RRMs 1 and 2 also contribute substantially to RNA binding. Moreover, PTB may not always dimerize to repress splicing. It is a monomer in solution.
Statistics
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PSSM-Id: 410174
Aligned: 6 rows
Threshold Bit Score: 217.653
Created: 14-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:2ADB; Homo sapiens polypyrimidine tract binding protein RNA recognition motif 2 binds a CUCUCU oligonucleotide, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                # #                          # # #  # # #                            #  
2ADB_A        27 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 106 human
NP_001026106 147 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQHAKLSLDGQNIYNACCTLRID 226 chicken
1SJR_A        40 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 human
3ZZY_A        22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 human
XP_014341554 146 MSGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSSQHAKLSLDGQNIYNACCTLRID 225 coelacanth
NP_001083815 180 MSGQSPVLRIIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPVSAQHAKLSLDGQNIYNACCTLRID 259 African clawed ...
Feature 1        ####  ##### ###           # 
2ADB_A       107 FSKLTSLNVKYNNDKSRDYTRPDLPSGD 134 human
NP_001026106 227 FSKLTSLNVKYNNDKSRDYTRPDLPSGD 254 chicken
1SJR_A       120 FSKLTSLNVKYNNDKSRDYTRPDLPSGD 147 human
3ZZY_A       102 FSKLTSLNVKYNNDKSRDYTRPDLPSGD 129 human
XP_014341554 226 FSKLTSLNVKYNNDKSRDYTRPDLPSGD 253 coelacanth
NP_001083815 260 FSKLTSLNVKYNNDKSRDYTRPDLPSGD 287 African clawed frog

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