1RRQ,1X51,4YPR


Conserved Protein Domain Family
NUDIX_DNA_Glycosylase_C-MutY

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cd03431: NUDIX_DNA_Glycosylase_C-MutY 
C-terminal domain of DNA glycosylase
DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the NUDIX hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to oxo-dGMO and inorganic pyrophosphate. The similarity strongly suggests that the two proteins share a common evolutionary origin.
Statistics
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PSSM-Id: 467537
Aligned: 413 rows
Threshold Bit Score: 65.0172
Created: 13-Sep-2005
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding and
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding and oxoG recognition site [nucleic acid binding site]
Evidence:
  • Structure:1RRQ: Geobacillus stearothermophilus MutY binds oxoG DNA, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                               ###                                                  #
1RRQ_A    237 VKQVPLAVAVLADdeGRVLIRKRDSTGLLanLWEFPSCETdgadgKEKLEQMVGEQYGlqvel--------tepiVSFEH 308 Geobacillus stearo...
ADE10668  225 VPERSAVFLLLMHg-NDILLEKRPGSGIWggLWCPPQFEDe---dAARDWFVRNGMEAseg-----------erlDTFTH 289 Sideroxydans litho...
ABB73387  244 LPEREAVLLLAVAq-GKILLEKRPSTGIWgaLWSLPEMGMn---eNVIEYCLRFGINVrpm-----------sqmEALTH 308 Nitrosospira multi...
AAZ98083  226 LPEKEVQMLLFVEd-GRLLLEKRPPRGIWggLWSLPELPAe---vDAGRHCRDHFGFRtisl----------rtlPRLSH 291 Thiobacillus denit...
CAJ50673  228 VPERQISMLVLEHk-GAILLQQRPSPGIWggLWSLPEFDAa---gDADNATRTLGLEPaah-----------yalAAFAH 292 Bordetella avium 197N
AEC20929  237 SPERQCRMLVARNa-DHILLEQQVSPGIWggLWSLPRYDSd---eDLQAACCRWGSHDapa-----------qrmAGMVH 301 Pusillimonas sp. T7-7
EKU29200  237 QDERYAHVLILELn-GQVLLEQRPDKGIWggLLTLPQFDDa---iSLQTAALHWSDEEai-------------alASFQH 299 Alcaligenes sp. HP...
EJL87195  253 VPEKDTMMLVISEg-GDVLLQQRPDSGIWggLLSLPELPVs---rSAEEFELAVDNATrpfgtl-----aacrklQPFSH 323 Herbaspirillum sp....
ABR88600  253 VPEKQTTMLLIVDk-DEVLLEQRPDKGIWggLLSLPEIAAe---sADAQFDAVMAQAVarfgva-----asqerlSMFTH 323 Janthinobacterium ...
EKU84211  242 TPEKRTALLVVIDg-GEVLLEQRPQTGIWggLLSLPEVGGh---vPMDEDEPPVCTADvaaaasafgtvdevrplSPLVH 317 Massilia timonae C...
Feature 1     ####                                             ##       
1RRQ_A    309 AFSHLVWQLTVFPGRLvhgg----------pveePYRLAPEdelkayaFPVSHQRVWR 356 Geobacillus stearothermophilus
ADE10668  290 TFTHFKLHITPLRVELarkpl--------laaqpGAVWLDVgealgaaIPTPVRKVLS 339 Sideroxydans lithotrophicus ES-1
ABB73387  309 TFTHFRLRIYPLILQVisrppdhltpevlsqprrPCVWRMPedalkaaIPSPVRKVLL 366 Nitrosospira multiformis ATCC 25196
AAZ98083  292 TFTHFKLHIHPVRLDVspeg----------sarpGPVWLPFsaalatgLPAPVRKLVL 339 Thiobacillus denitrificans ATCC 25259
CAJ50673  293 TFTHYRLHVRPWYVPVhaagl--------csaslPQRWVPAdalntiaLPAPIKKLLL 342 Bordetella avium 197N
AEC20929  302 VFTHFRLHIEPWYVVNntlql--------aepapAQRWVALdelrntaLPAPVRKILE 351 Pusillimonas sp. T7-7
EKU29200  300 VFSHFKLHITPWLLQVdesvl--------aepvaGQQWQDHealeqtaLPAPIRKLLL 349 Alcaligenes sp. HPC1271
EJL87195  324 VFTHFKLHVSPFQVVLkkrql--------qaaesVYVWYPVaeladapLPAPVKKLLL 373 Herbaspirillum sp. CF444
ABR88600  324 VFTHFKLHITPYHIALarrie--------ragqdQYVWYPLakmadapLPAPVKKLLL 373 Janthinobacterium sp. Marseille
EKU84211  318 VFTHYKLHIAPFAVTLtara----------alapGHVWWKLdvvreapLPAPVKKLLL 365 Massilia timonae CCUG 45783

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